Lex Nederbragt

Login: lexnederbragt

Company: University of Oslo

Location: Norway

Bio: Biologist, bioinformatician, researcher, Software & Data Carpentry instructor. #openscience. https://impactstory.org/u/lexnederbragt

Blog: flxlex.flavors.me

Blog: flxlex.flavors.me

Member of

1. Biomedical Informatics Research Group (BMI)
2. Centre for Computational Inference in Evolutionary Life Science
3. Software Carpentry
4. null

Repositories

2015-06-02-Oslo

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2016-11-15-ttt-online

Online Instructor Training workshop

2018-05-28-online-ttt

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454_transcriptome_snps

Procedure to obtain species specific SNPs based on low-coverage 454 transcriptome data from two species

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

bios

For the github course

bios1100-test

Materials for the BIOS1100 test-course

carpentries.org

Website

carpentrycon

Information and ideas for CarpentryCon

cloud-genomics

Cloud Genomics lesson

datacarpentry.github.io

Website repo

denovo-assembly-tutorial

A tutorial for learning de novo assembly

developments-in-next-generation-sequencing

Developments in next generation sequencing: instruments, read lengths, throughput. See

dibsi

Data Intensive Biology Summer Institute

doconce_demo

Minimal doconce demos

fpd-ibv-2017

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github_collab_workshop

Material for a workshop on "Writing and publishing on the web together using Github"

git-novice

Software Carpentry introduction to Git for novices.

guacamole-recipe

For the github course

guacamole_recipe_demo

For Resbaz course

ibvcse

Resources for the IBV version of Computing in Science Education.

INF-BIO9120_fall2012_de_novo_assembly

Course material for the de novo assembly part (including readQC and trimming) for the INF-BIO9120 course at Univ. of Oslo

INF-BIO9120_fall2013_de_novo_assembly

Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013

INF-BIOx121

Course material for 2017 edition of the INF-BIOx121 course "High Throughput Sequencing technologies and bioinformatics analysis" at the University of Oslo

INF-BIOx121_fall2014_de_novo_assembly

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INF-BIOx121_H16_binder

Repository for running course notebook through myBinder

instructor-training-reorg

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inverted_repeats

Detecting and clipping artifactual inverted repeats in Illumina reads

jupyter_dashboards_workshop

2018-02-08-dashboards

lexnederbragt.com

My website

make-novice

Novice lesson on Make

mean

Code for the testing workshop

mean-1

Code for unit testing workshop @ Research Bazaar 2018

mywebsite

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

oppgaver

Oppgavesett for programmering

python-novice-gapminder

Introduction to Python for non-programmers using gapminder data

python-testing

Holds testing section, a 4-hour workshop session on testing and continuous integration.

RepSeq

These files belong to this publication: Nederbragt et al. (2010): Identification and quantification of genomic repeats and sample contamination in assemblies of 454 pyrosequencing reads, *Sequencing*. doi:10.1155/2010/782465

resbaz_github_bios

For Resbaz course part 2

r-novice-gapminder

Introduction to R for non-programmers using gapminder data.

sequencetools

Set of scripts etc. to work with DNA sequence and related files

shell-novice

Software Carpentry introduction to the shell for novices.

sql-novice-survey

Software Carpentry introduction to SQL for novices.

stupid_test_repo

for trying out stuff

swc-instructor-retreat-2015-3PM-UTC

Material for the " Simple online and offline resources for making learning more interactive" session of the Software Carpentry + Data Carpentry Instructor & Helper Retreat November 14, 2015

thirdbit

The Third Bit website

training-template

Template for instructor training workshop websites.

unit_test_lesson_test

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vg

tools for working with variation graphs

website

Software Carpentry website

windows-installer

Software Carpentry installer for Windows.

Commits To