Biomedical Informatics Research Group (BMI)

Login: uio-bmi

Company: null

Location: Oslo, Norway

email:

Blog: http://www.mn.uio.no/ifi/english/research/groups/bmi/

Members

1. Boris Simovski
2. Lex Nederbragt
3. Torbjørn Rognes
4. null

Repositories

bmi_python_sample_project

A baseic Python sample project, that can be used to initialize new Python projects

crypt4gh

null

galaxy-graph-peak-caller

This is a fork of Galaxy, intended for running Graph Peak Caller.

GPU-Minimap

null

graph_peak_caller

ChIP-seq peak caller for reads mapped to a graph-based reference genome

graph_peak_caller_paper

Nextflow Graph-based chip seq pipeline, using the graph-based peak caller

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

in1000-referanseoppgaver

Oppgaver til referanser i in1000

infra-api

Api for infrastructure server (for github-hooks)

infra-frontend

A frontend in javascript for displaying test and coverage results for Python projects.

malaria

null

multitprocessing-session

Multiprocessing(threading) with python

NucBreak

Location of structural errors in a genome assembly and structural variations between a pair of genomes

NucBreak_tests

null

OffsetBasedGraph

Python package for handling genomic offset-based graphs

programming-session

Code for programming sessions

programming_session_decorators

Exercices/examples for programming session on decorators

pyvg

Working with vg graphs in python, e.g. transforming to OffsetBasedGraphs

refactorR

refactoring r code

sequence_retriever_refactoring

Refactoring excercise (sequence retriever)