Rutger Vos

Login: rvosa

Company: Naturalis Biodiversity Center

Location: Leiden, the Netherlands

Bio: I am a computational evolutionary biologist. I work at the Dutch national biodiversity center @naturalis.

Blog: http://rutgervos.blogspot.com

Blog: http://rutgervos.blogspot.com

Member of

1. HIP Leadership Team
2. Naturalis Biodiversity Center
3. NeXML
4. Phyloinformatics Research Foundation
5. phylotastic

Repositories

arangs2016

Automated and Reproducible Analysis of Next Generation Sequencing data (ARANGS16)

bh15

Repository for project group at the BioHackathon 2015

bioperl6

reimplementation of BioPerl classes in Perl6

bio-phylo

Bio::Phylo - Phyloinformatic analysis using Perl

bio-phylo-beagle

Wrapper for BEAGLE library

bio-phylo-forest-dbtree

Bio::Phylo::Forest::DBTree - Object API for trees in portable databases

bio-phylo-xs

Bio::PhyloXS - Core Bio::Phylo modules implemented in C

biosql-phylotools

tools for biosql for Phyloinf09 participants

BPSDA

null

brahms-digi-webapp

Simple pipeline to join BRAHMS CSV records with image analysis

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

cobra

null

comphy-cobra

null

cordova-test

null

flopoontology

sentence

FlorML

Source code and data of the flora text mining project

img-classify

Proof of concept demonstrating identification of specimens using an artificial neural network

mevr

Molecular Epidemiology of Viruses in R

nepenthes

scripts for annotated tree viz

NeXML_Parse

R code for parsing NeXML file. This code extract all otu id and plot phylogenetic tree for user specified no of node.

ngs-workflows

Source code, data and documentation to demonstrate automation in NGS data analysis

perlrdf

Official releases of RDF::Query may be found on CPAN: http://search.cpan.org/dist/RDF-Query/

peyotl

python library for interacting with Open Tree of Life resources

phylobank

null

phylo-primates-sim

Analyzing a simulated primate phylogeny

Policies

Lab policies and operating procedures

primate-supertree

Data repository for source tree topologies, DNA sequence alignments and integrative results for the supertree of the Primates

puppet-monophylizer

Puppet module for monophylizer

rafs

Data munging scripts to study the rise and fall of species

species-delimitation-data

Supplementary data repository for "Algorithmic single-locus species delimitation: effects of sampling effort, variation and non-monophyly in four methods and 1870 species of beetles"

supersmart-bundle

null

supersmart-phylota

Source code for the SUPERSMART pipeline

synth

Modular synth experiment

treeviz-workshop-2017

Workshop/hackathon for interoperability across tree viewers

vagrant-slitaz

Slitaz Linux (base-cooking) based vagrant box

wav.js

wav.js is a javascript audio lib for reading and slicing WAVE files

Commits To