intermine/standard-model

Name: standard-model

Owner: InterMine

Description: staging place for extensions of intermine 'core' model (standard data model)

Created: 2017-04-01 18:35:50.0

Updated: 2017-04-01 18:35:50.0

Pushed: 2017-04-02 21:59:15.0

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Size: 5

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README

standard-model

staging place for extensions of intermine 'core' model (standard data model)

Please place your proposed standard extension in an appropriate directory, or create a new one if necessary.

For the moment the directories are organised as the 'aspects' used in a mine web interface, plus a core directory.

core

so_term_list.txt: list of Sequence Ontology (SO) entities used in intermine

core.xml: intermine core model Author/Publication Data source/set Ontology BioEntity/SequenceFeature Protein Organism Synonym/xref

genomics_additions.xml: extension to the SO model (GeneFlankingRegion)

Genomics

Function

Proteins

Variation

Disease

Homology

Interactions

Expressions