simonsfoundation/Tr1_batfKO

Name: Tr1_batfKO

Owner: Simons Foundation

Description: Critical role of the transcription factors IRF1 and BATF in preparing the chromatin landscape during Type 1 regulatory cell differentiation

Created: 2016-12-23 12:42:55.0

Updated: 2016-12-23 13:04:24.0

Pushed: 2016-12-23 19:25:32.0

Homepage: null

Size: 340

Language: Jupyter Notebook

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README

Tr1_BatfKO_Irf1KO_Networks

Critical role of the transcription factors IRF1 and BATF in preparing the chromatin landscape during Type 1 regulatory cell differentiation IRF1 KO and BATF KO networks from Figures 7F-I, Supplemental Figures 7-8, Karwacz et al. 2017. Nature Immunology.

This repository is intended to be used with the Binder service. Please click the image below: if all is well the link should redirect to a new binder image running a Jupyter notebook server.

Once the binder is launched, click on “Irf1KO_BatfKO_Tr1_networks.ipynb”. The iPython notebook will open in a new tab. Then, to visualize networks:

1. Select “Cell” and then click “Run All”
2. Draft Documentation for this tool can be found here: https://github.com/simonsfoundation/jp_gene_viz/blob/master/doc/dNetwork%20widget%20overview.ipynb