CD2H gitForager

Simons Foundation

Login: simonsfoundation

Company: null

Location: New York City

email:

Blog: https://www.simonsfoundation.org

Members

Dylan Simon

Repositories

1702_DC_lineageNets: null
anno-dbnsfp: null
bioinfo_pipelines_cwl: Bioinformatics pipelines using Common Workflow Language and Docker.
collective.easyslideshow: null
DCquantAtacNetworks: null
franke_wolfe: A Numpy/Scipy implementation of the Franke Wolfe constrained optimization methodology.
gene2mesh: null
hydrogen-benchmark-PRX: null
inferelator_ng: Inferelator refactor and generalization.
jp_gene_viz: A collection of visualizations for genomics related information for use with Jupyter notebooks.
jp_svg_canvas: A very simple SVG canvas proxy widget for Jupyter visualizations
mountainlab_test2: null
multitask_inferelator: null
NNQP: Efficient numba based implementation of a nonnegative quadratic programming solver
OnlineSimilarityMatching: Benchmark of online PCA algorithms
pipeline: validated, scalable, minimalist variant detection pipeline
regulatory_network_examples: Some regulatory network examples. You may need passwords to decrypt some data files.
remap2b38: Remap a bam file to a given reference, and call variants with a choice of GATK HaplotypeCaller, Freebayes, Platypus.
SCaIP: Tools for Calcium Imaging Analysis
sdp_kmeans: null
simons_jupyterhub: A collection of configurations and related information for creating a Jupyterhub instance for Simons Foundation.
SourceExtraction: Extraction of neural (and dendrite) activity from 3D calcium videos
spatial_transcriptomics_viz: visualization aids for spatial transcriptomics
Th17_TRN_Networks: Data and notebooks for "Leveraging ATAC-seq data for transcriptional regulatory inference in Th17 Cells" by Miraldi et al.
Tr1_batfKO: Critical role of the transcription factors IRF1 and BATF in preparing the chromatin landscape during Type 1 regulatory cell differentiation
variants: null
yeast_regulatory_network: Regulatory network visualization and workflow tools specialized for analysis of yeast biology.

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.