openworm/simple-C-elegans

Name: simple-C-elegans

Owner: OpenWorm

Description: Minimalist Python code -- based on OpenWorm and the published literature -- for modeling C. elegans neural network dynamics

Forked from: adammarblestone/simple-C-elegans

Created: 2016-08-15 18:53:26.0

Updated: 2016-08-16 13:22:33.0

Pushed: 2017-02-11 19:18:55.0

Homepage: null

Size: 6987

Language: Jupyter Notebook

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README

simple-C-elegans

Minimalist Python code, based on OpenWorm and the published literature, for modeling C. elegans neural network dynamics

Key sources include:

http://www.openworm.org

Kunert, James, Eli Shlizerman, and J. Nathan Kutz. “Low-dimensional functionality of complex network dynamics: Neurosensory integration in the Caenorhabditis elegans connectome.” Physical Review E 89.5 (2014): 052805. http://arxiv.org/abs/1310.6689

Wicks, Stephen R., Chris J. Roehrig, and Catharine H. Rankin. “A dynamic network simulation of the nematode tap withdrawal circuit: predictions concerning synaptic function using behavioral criteria.” The Journal of neuroscience 16.12 (1996): 4017-4031. http://www.jneurosci.org/content/16/12/4017.short

Quickstart

1. Install Docker on your machine
2. Clone this repo
3. Either run ./run-notebook.sh or grab the docker command inside that script and run it on the command prompt (Windows)
4. Navigate your browser to http://localhost:8888 and choose the notebook