CD2H gitForager

OpenWorm

Login: openworm

Company: null

Location: International

email: info@openworm.org

Blog: http://openworm.org

Members

Repositories

behavioral_syntax: behavioral syntax analysis based on the paper of Andre Brown
bionet: Artificial biological neural network
Blender2NeuroML: Conversion script to bring neuron models drawn in Blender into NeuroML format
BlueBrainProjectShowcase: A project to illustrate how models and data from the Blue Brain Project can be converted to NeuroML and PyNN
c302: c302 is in the process of moving here from https://github.com/openworm/CElegansNeuroML/tree/master/CElegans/pythonScripts/c302
CElegansNeuroML: NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302
ChannelWorm: A repository to integrate data, information, scripts, and models of ion channels in C. elegans
CyberElegans: Neuromechanical model of C. Elegans
HeuristicWorm: null
hodgkin_huxley_tutorial: Hodgkin Huxley Tutorial
JohnsonMailler_MuscleModel: C. elegans muscle model from Johnson & Mailler 2015
model_completion_dashboard: Model Completion Dashboard
movement_cloud: Movement Analysis on the cloud
movement_validation_cloud: Previous attempt at a movement validation cloud application
muscle_model: Model of c.elegans muscle
neuronal-analysis: Tools to produce, analyse and compare both simulated and recorded neuronal datasets
OpenWorm: Project Home repo for Central Dockerfile and Project-wide issues
open-worm-analysis-toolbox: A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.
openwormbrowser-ios: OpenWorm Browser for iOS, based on the open-3d-viewer, which was based on Google Body Browser
openworm_docs: Documentation for OpenWorm
openworm.github.io: OpenWorm Website
openworm-scholar: A service providing enhanced notifications of published research in Open Worm
org.geppetto: Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.
org.geppetto.bower: Geppetto repository for packaged bower components
org.geppetto.core: Geppetto core bundle
org.geppetto.datasources: null
org.geppetto.docs: Repository to host Geppetto documentation
org.geppetto.frontend: Geppetto frontend bundle (Web Application)
org.geppetto.frontend.jupyter: Geppetto Jupyter Notebook Extension
org.geppetto.frontend.nodejs: Geppetto Node.js backend
org.geppetto.maven: Maven repository for Geppetto
org.geppetto.model: null
org.geppetto.model.neuroml: NeuroML Model Bundle for Geppetto
org.geppetto.model.nwb: null
org.geppetto.model.swc: SWC Model Interpreter for Geppetto
org.geppetto.persistence: Persistance bundle for Geppetto
org.geppetto.recording: Python project allowing to create a recording for Geppetto
org.geppetto.samples: Sample simulations for Geppetto
org.geppetto.sibernetic: PCI SPH Model Bundle for Geppetto
org.geppetto.simulation: Generic simulation bundle for Geppetto
org.geppetto.simulator.external: Geppetto bundle to add support for external neuronal simulators (NEURON, etc.)
org.geppetto.simulator.jlems: jLEMS based simulator for Geppetto
org.geppetto.simulator.libroadrunner: libRoadRunner simulator bundle for Geppetto
org.geppetto.simulator.sph: SPH Simulator bundle for Geppetto
org.geppetto.solver.sph: PCI SPH Solver bundle for Geppetto
org.geppetto.templatebundle: null
org.geppetto.testbackend: null
org.wormsim.bower: Wormsim repository for packaged bower UI components
org.wormsim.frontend: WormSim frontend bundle
owcs: null
pharyngeal_muscle_model: C. elegans pharyngeal muscle cell (pm3) model, capable of generating Ca2+ slow action potential (NEURON, NMODL).
pygeppetto: Python Library to create, load, edit and save a Geppetto Model
PyOpenWorm: Unified, simple data access python library for data & facts about C. elegans anatomy
recurrent: Natural language parsing of dates and recurring events
robots: C. elegans robots
SegWorm: SegWorm is Matlab code from Dr. Eviatar Yemini built as part of the WormBehavior database (http://wormbehavior.mrc-lmb.cam.ac.uk/)
sibernetic: This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion
sibernetic_config_gen: Generates starting scene configuration for the Sibernetic simulation engine
sibernetic_NEURON: Interface between Sibernetic and NEURON simulator
simple-C-elegans: Minimalist Python code -- based on OpenWorm and the published literature -- for modeling C. elegans neural network dynamics
skeletonExtraction: Transforms Sibernetic output into a COLLADA animation
tests: OpenWorm tests across various repos
tracker-commons: Compilation of information and code bases related to open-source trackers for C. elegans
wormbrowser: The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans
WormWorx: C. elegans simulator

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.