INCF/BIDS2NDA

Name: BIDS2NDA

Owner: International Neuroinformatics Coordinating Facility (INCF)

Description: A conversion tool for creating NDA compatible metadata representation from BIDS datasets.

Created: 2016-06-13 21:04:08.0

Updated: 2018-01-10 18:29:07.0

Pushed: 2018-01-15 15:52:04.0

Homepage: null

Size: 31

Language: Python

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README

BIDS2NDA

Extract NIHM Data Archive compatible metadata from Brain Imaging Data Structure compatible datasets

Installation

pip install https://github.com/INCF/BIDS2NDA/archive/master.zip

Usage

usage: bids2nda [-h] [-v] BIDS_DIRECTORY GUID_MAPPING OUTPUT_DIRECTORY

BIDS to NDA converter.

positional arguments:
  BIDS_DIRECTORY    Location of the root of your BIDS compatible directory
  GUID_MAPPING      Path to a text file with participant_id to GUID mapping.
                    You will need to use the GUID Tool
                    (https://ndar.nih.gov/contribute.html) to generate GUIDs
                    for your participants.
  OUTPUT_DIRECTORY  Directory where NDA files will be stored

optional arguments:
  -h, --help        show this help message and exit

GUID_MAPPING file format

The is the file format produced by the GUID Tool: one line per subject in the format

<participant_id> - <GUID>

Example outputs

See /examples