Name: SciComp-Materials
Owner: Duke Center for Genomic and Computational Biology
Description: Materials for GCB Academy course Intro to Scientific Computing for Genomics
Created: 2015-10-01 19:45:07.0
Updated: 2017-09-06 04:38:32.0
Pushed: 2016-10-18 03:38:06.0
Size: 7445
Language: Shell
GitHub Committers
| User | Most Recent Commit | # Commits |
|---|---|---|
| David Rio Deiros | 2014-12-04 21:00:48.0 | 1 |
| Hilmar Lapp | 2016-10-18 03:29:44.0 | 32 |
| Doug Latornell | 2014-07-22 20:35:36.0 | 1 |
| Konrad Hinsen | 2014-01-10 13:09:03.0 | 1 |
| Stefan Pfenninger | 2014-08-25 09:06:49.0 | 2 |
| Trevor Bekolay | 2014-10-22 15:43:15.0 | 6 |
| W. Trevor King | 2014-10-22 15:20:15.0 | 1 |
| Rémi Emonet | 2014-11-25 22:24:55.0 | 3 |
| Karen Cranston | 2016-03-21 00:57:15.0 | 20 |
| Thomas Kluyver | 2014-09-10 00:57:14.0 | 5 |
| Zbigniew J?drzejewski-Szmek | 2014-07-05 19:32:51.0 | 1 |
| David LeBauer | 2015-01-17 06:45:12.0 | 3 |
| Aron Ahmadia | 2014-01-13 13:30:45.0 | 1 |
| Dave Jones | 2013-12-08 17:25:37.0 | 2 |
| Darren Boss | 2016-03-23 11:51:02.0 | 9 |
| Greg Wilson | 2015-01-21 16:36:07.0 | 155 |
| Matt Davis | 2015-02-02 17:41:36.0 | 8 |
| Scott White | 2015-02-05 00:06:40.0 | 27 |
| Aaron O'Leary | 2014-12-10 13:23:58.0 | 8 |
| John Blischak | 2015-01-21 16:05:50.0 | 1 |
| Bill Mills | 2014-12-31 06:06:23.0 | 4 |
| Pauline Barmby | 2014-12-29 18:28:48.0 | 5 |
| Bernhard Konrad | 2014-02-10 21:39:14.0 | 7 |
| Dan Leehr | 2015-10-06 18:34:52.0 | 55 |
| Andy Boughton | 2015-01-07 02:29:12.0 | 14 |
| Amy Brown | 2014-06-24 15:38:32.0 | 1 |
| Ruth Collings | 2014-12-04 17:44:11.0 | 1 |
| Pete Bachant | 2014-12-27 17:36:07.0 | 1 |
| François Michonneau | 2014-11-03 18:30:53.0 | 1 |
| Daniel Chen | 2014-10-08 22:35:02.0 | 2 |
| natalie-robinson | 2014-11-03 17:03:17.0 | 2 |
| ARCHER training | 2014-12-10 13:16:06.0 | 3 |
Other Committers
| User | Most Recent Commit | # Commits | |
|---|---|---|---|
| Christian Jacobs | c.jacobs10@imperial.ac.uk | 2014-06-26 15:39:25.0 | 1 |
| Darren Boss | darren.boss@duke.edu | 2016-03-22 14:43:43.0 | 38 |
| Darren Boss | dtb17@dscr-slogin-02.dscr.duke.local | 2015-02-06 03:26:44.0 | 1 |
| dtrap | dtrapezoid@gmail.com | 2014-04-11 21:40:54.0 | 1 |
| Brenna | info@brennaobrien.com | 2014-05-24 17:02:27.0 | 2 |
| Kate | kl167@le.ac.uk | 2014-11-24 17:06:03.0 | 1 |
| Raniere Silva | raniere@ime.unicamp.br | 2015-01-21 17:15:58.0 | 72 |
| Raniere Silva | raniere@ime.unicamp.br | 2015-01-21 17:15:58.0 | 72 |
| Timothée Poisot | tim@poisotlab.io | 2014-11-14 00:38:43.0 | 1 |
Course materials for the Introduction to Scientific Computing for Genomics course held at least one once every year as part of the GCB Academy.
With the exception of the SLURM and Python lessons, the material is directly reused from Software Carpentry, in part with modifications. Most of the modifications consist of adapting the material to genomic (BED format) sample data, and of simplifying or trimming down the material. Some material was also added as a result of putting this curriculum together.
All material in this repository is available for reuse under the Creative Commons Attribution (CC-BY) and the MIT licenses. See LICENSE.md for details.