Name: tcgavcf-tool
Owner: UCSC Cancer Research
Description: null
Created: 2015-07-13 21:31:17.0
Updated: 2015-07-13 21:33:33.0
Pushed: 2015-09-24 17:55:42.0
Homepage: null
Size: 209
Language: Python
GitHub Committers
User | Most Recent Commit | # Commits |
---|---|---|
Kyle Ellrott | 2015-09-24 17:55:21.0 | 13 |
Jaclyn Smith | 2015-09-10 04:07:27.0 | 4 |
Other Committers
User | Most Recent Commit | # Commits | |
---|---|---|---|
Kyle Ellrott | kellrott@bazaar.pod | 2015-09-08 21:28:22.0 | 1 |
Kyle Ellrott | kellrott@podk.local | 2015-09-24 06:29:25.0 | 4 |
Tool to read a TCGA Variant Call Format (VCF) file and output an equivalent file with a different header
tcga-vcf-reheader.py input_file_path output_file_path parameter_file_path
Currently only changes to the ##SAMPLE
lines are supported. Any existing ##SAMPLE
lines will be replaced by the ones specified in the YAML file.
WARNING: This tool will completely replace any existing ##SAMPLE lines. If the parameter file names different samples than were used in the VCF, the resulting output will be a misleading chimeric monster.