Name: sbgnviz-as
Owner: iVis-at-Bilkent
Description: Cytoscape Web based visualization tool for process description maps in SBGN
Created: 2015-03-24 17:01:39.0
Updated: 2015-05-14 13:43:21.0
Pushed: 2015-05-14 20:14:05.0
Homepage: http://www.cs.bilkent.edu.tr/~ivis/SBGNViz.as/
Size: 4156
Language: ActionScript
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SBGNViz.as is a web application based on Cytoscape Web to visualize the pathway models represented by SBGN Process Description Notation. SBGNViz.as accepts the pathway models represented in SBGN-ML format.
SBGNViz.as was built by extending the web based data visualization tool CytoscapeWeb
to support the SBGN Process Description Notation. SBGNViz.as was
developed using Adobe Flash Builder and
[Flex]http://www.adobe.com/products/flex.html technologies.
A sample application using SBGNViz.as can be found here.
SBGNViz.as is distributed under GNU Lesser General Public License. Instructions for obtaining a working copy of the project can be found in README.txt and README_SBGNViz.txt files. SBGNViz.as works on every environment supporting Adobe Flash.
Below are some sample screenshots from SBGNViz.as, illustrating some of its capabilities. Please click on a figure to see it in full size. A User's Guide can be found here, documenting all features of the tool.
Glycolysis pathway visualized in SBGNViz.as |
Parameters to configure automatic layout |
Sample pathway before automatic layout is applied |
Sample pathway after automatic layout is applied |
Highlighting all processes a selected node is involved in |
Inspecting detailed properties of a macromolecule |
Saving current process description diagram as PDF |
Loading a process description diagram from an SBGN-ML file |
