Name: java-bots
Owner: WikiPathways
Description: Automatic bots for WikiPathways
Created: 2015-02-06 20:18:58.0
Updated: 2016-08-10 21:48:50.0
Pushed: 2017-02-22 13:31:44.0
Homepage:
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Size: 8899
Language: Java
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README
java-bots
Java bots for WikiPathways
- All bots are running regularly (usually once every day)
- Results can be viewed here: http://www.pathvisio.org/data/bots/
- Example launch command:
`java -Xmx2048m -Dfile.encoding=UTF-8 -cp org.wikipathways.bots-3.2.2.jar org.wikipathways.bots.GMTBot gmt-bot.props gmt-output`
Available bots:
- Missing description (adds curation tag to pathways without description)
- Missing literature references (adds curation tag to pathway without literature references)
- Unconnected lines (adds curation tag to pathway with unconnected lines)
- Missing xref (adds curation tag to pathway which contains datanodes without xref annotation)
- Invalid xrefs (generated list of pathways with xrefs that are not in the identifier mapping databases)
- GMT file generation (generates a GMT file that can be used for gene set enrichment analysis)
- RSSM file generation (generates RSSM file - complex XML file - of the complete pathway collection)
