WikiPathways

Login: wikipathways

Company: null

Location: null

email:

Blog: http://www.wikipathways.org

Members

1. Alexander Pico
2. Egon Willighagen
3. Samad Lotia

Repositories

academy

Organized training examples for new WikiPathways authors

bioentities

Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.

biopax2json

Convert Biopax OWL (rdf/xml) data to JSON-LD

bulk-gpml2biopax-js

null

cytoscape-wikipathways-app

WikiPathways app for Cytoscape to open and access pathways from WikiPathways

EuropePMCLinks

Repository for code to create the Europe PMC external links

go-classification

Uses GO-Elite to find over represented GO terms for a pathway based on the genes in the pathway.

gpml2pvjson-js

Convert GPML (WikiPathways XML format) to JSON-LD

GPML2RDF

GPML2RDF converter

gpml-updater

Reads in a GPML file an writes out the newest GPMl version (independent of the GPML version in the file)

java-bots

Automatic bots for WikiPathways

kaavio

Diagram viewer and editor with Linked Open Data capabilities.

kaavio-editor

Editor plugin for kaavio

lucene-indexer

Library to create the WP lucene index

mediawiki-extensions-WikiPathways

Main WikiPathways extension

mediawiki-extensions-WikiPathways-GPML

GPML Handler for WikiPathways

mediawiki-extensions-WikiPathways-GPMLConverter

Convert GPML to other file formats

mediawiki-vendor

The vendor repo forked from upstream @ WMF

nanopublications

Project to convert content of WPRDF into nanopublications.

old-rwikipathways

R client package for the WikiPathways API.

org.wikipathways.client

Java client library for WikiPathways webservice

pathway-figure-ocr

Extracting gene sets from pubilshed pathway figures

pathway-finder

Your query list -> WikiPathways results, by means of mapping DBs

pvjs

JavaScript-based pathway viewer and editor

pvjson2biopax-js

Convert pvjson pathway data format to BioPAX format

pvjson2gpml-js

Convert biological pathway data from pvjson1.0 (json) to GPML 2013a (XML).

reactome2gpml-converter

Converts Reactome pathways to GPML format

rWikiPathways

R package for WikiPathways API

scripts

null

sgl-integration

null

svn-archive-wikipathways.org

null

test

Test repository for OWL as HTML+RDFa.

wikipathways-api-client-java

Java library for WikiPathways webservice

wikipathways-api-client-js

JS client for WikiPathways.org API

wikipathways-api-client-perl

null

wikipathways-api-client-py

Python API client for WikiPathways webservices.

wikipathways-issue-tracker

Collecting bug reports / feature requests / etc for WikiPathways

wikipathways.org

The main web site for the WikiPathways project.

wikipathways-sql-releaser

Library for generating database for WikiPathways data releases

wikipathways-upgrade-2015

null

wikipathways-upgrade-2016

null

wikipathways-upgrade-2017

null

wikipathways_wikidata_bot

null

wp2lod

Java source for conversion of WikiPathways GPML to triples

WPReactomeUploader

Script to Upload Reactome pathways in Wikipathways using the Wikipathways webservice

WpVocabularies

WikiPathways vocabularies for RDF representation