melbournebioinformatics/bpipe-trinotate

Name: bpipe-trinotate

Owner: Melbourne Bioinformatics

Description: bpipe script to run the trinotate transcriptome annotation pipeline

Created: 2014-05-09 06:18:45.0

Updated: 2014-07-16 15:46:08.0

Pushed: 2014-09-01 03:10:49.0

Homepage: null

Size: 140

Language: Groovy

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README

A bpipe script to run the Trinotate transcriptome annotation pipeline

Files Required

• A Trinity assembly file, Trinity.fasta

• A prepared pfam database

   http://sourceforge.net/projects/trinotate/files/TRINOTATE_RESOURCES/Pfam-A.hmm.gz/download -O Pfam-A.hmm.gz
  ip Pfam-A.hmm.gz
  ress Pfam-A.hmm
  

To Run

le load bpipe
e trinotate.groovy Trinity.fasta