Name: Karaage3-plugins-project-application
Owner: Melbourne Bioinformatics
Description: A Project Application plugin for Karaage3. Captures some basic extra information not in the current application process.
Created: 2018-02-08 01:38:29.0
Updated: 2018-02-08 01:40:58.0
Pushed: 2018-02-19 06:47:03.0
Homepage: null
Size: 430
Language: JavaScript
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A Project Application plugin for Karaage3. Captures some basic extra information not in the current application process.
Karaage is a cluster account management tool.
https://github.com/Karaage-Cluster/karaage
http://karaage.readthedocs.io/en/latest/
Karaage has a plugin framework for adding features. There is an included kgapplications plugin for managing user and project applications (https://github.com/Karaage-Cluster/karaage/tree/master/karaage/plugins).
This Project Application plugin is separate to the kgapplications plugin, and provides more tailored forms.
Karaage3 has the concept of project leaders, but does not capture who the lead chief investigator is for a project. Karaage also only records the institute of a project, but not lower level detail such as faculty or department (or their equivalents). This Project Application is based around accounting for which person, institution, faculty and department are responsible for the project. This aids usage reporting and data ownership. The forms ask for more detail than the builtin kgapplications. This helps with allocating suitable resources.
Karaage3 is installed as a (docker) container, and has a configuration file: /etc/karaage3/settings.py
To install Karaage3 please see:
://karaage.readthedocs.io/en/latest/getting_started.html
To include this plugin, create a location for the code, eg (assuming you are installing as root);
r -p /usr/local/src/karaage3/plugins/
Clone the code;
usr/local/src/karaage3/plugins/
clone https://github.com/melbournebioinformatics/Karaage3-plugins-project-application.git project_application
You will then need to modify the karaage service file and the configuration file to point to where the plugin is.
In
/karaage/etc/karaage3/settings.py
Add
rt sys
path.append('/usr/local/src/karaage3/plugins/project_application')
INS = [
'karaage.plugins.kgapplications.plugin',
'project_application.plugin',
To make the code visible to the karaage container, you will need to add the path to the karaage container service, eg;
Original
Start=/usr/bin/docker run --name karaage \ net="host" \ /etc/passwd:/etc/passwd \ /etc/group:/etc/group \ /opt/karaage/etc/munge:/etc/munge \ /opt/karaage/log/munge:/var/log/munge \ /opt/karaage/lib/munge:/var/lib/munge \ /opt/karaage/etc/slurm:/usr/local/etc \ /opt/karaage/etc/shibboleth:/etc/shibboleth \ /opt/karaage/etc/karaage3:/etc/karaage3 \ /opt/karaage/log/apache2:/var/log/apache2 \ /opt/karaage/log/karaage3:/var/log/karaage3 \ /opt/karaage/lib/karaage3:/var/lib/karaage3 \ /opt/karaage/cache/karaage3:/var/cache/karaage3 \
Added
/usr/local/src/karaage3/plugins:/usr/local/src/karaage3/plugins \
Original
/var/run/mysqld:/var/run/mysqld \ ianmay/karaage:slurm17.02-apache