Big Data Genomics

Login: bigdatagenomics

Company: null

Location: null

email:

Blog: http://bdgenomics.org/

Members

  1. Andrew Chen
  2. Carl Yeksigian
  3. Devin Petersohn
  4. Eric Tu
  5. Frank Austin Nothaft
  6. Isaac Hodes
  7. Justin Paschall
  8. Matt Massie
  9. Michael L Heuer
  10. null

Repositories

adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
avocado
A Variant Caller, Distributed. Apache 2 licensed.
awesome-adam
Awesome list of applications that extend Big Data Genomics ADAM. CC0 licensed.
awesome-adam
Awesome list of applications that extend Big Data Genomics ADAM. CC0 licensed.
bdg-formats
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
bdg-services
Utility classes for wrapping services or other interfaces around a Spark/ADAM cluster. Apache 2 licensed.
bigdatagenomics.github.io
Web Site for the Big Data Genomics Group
cannoli
Big Data Genomics ADAM Pipe API wrappers for bioinformatics tools. Apache 2 licensed.
convert
Conversions to and from Big Data Genomics Avro Formats. Apache 2 licensed.
corretto
Read error correction utilities.
deca
Distributed exome CNV analyzer. Apache 2 licensed.
eggo
Ready-to-go Parquet-formatted public 'omics datasets
gnocchi
null
lime
Distributed Set Theory for Genomics
mango
A scalable genome browser. Apache 2 licensed.
mango-notebook
Notebook tools for Big Data Genomics. Apache 2 licensed.
PacMin
Assembler for PacBio reads. Apache 2 licensed.
quinine
A refreshing treatment for all quality control ailments. Apache 2 licensed.
recipes
Recipes using BDG projects. Apache 2 licensed.
rice
An RNA pipeline built on top of ADAM. Apache 2 licensed.
toil-wdl-api
Exemplar API that mediates Toil with a WDL front-end and workflow tracking.
utils
General (non-omics) code used across BDG products. Apache 2 licensed.
workflows
Toil workflows for bigdatagenomics tools. Apache 2 licensed.
This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.