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Repositories

150826_pathway_analysis: null
2013-davis-assembly: null
2013-norwich-bioinfo: 2013 advanced bioinformatics workshop at Norwich
2013-norwich-biology: null
2014-msu-rnaseq: null
2015-angus-paper: null
2015-mar-semimodel: null
2015-may-nonmodel: Workshop materials for dib-training.readthedocs.org/en/pub/2015-05-04-mRNAseq-nonmodel.html
2015-nov-adv-rna: null
2015-nov-docker: Materials for http://dib-training.readthedocs.org/en/pub/2015-11-09-docker.html
2015-nov-jupyter: null
2015-oct-nonmodel: Workshop materials for http://dib-training.readthedocs.org/en/pub/2015-10-26-mRNA-denovo.html
2015-python-intro: null
2015-sep-microbial: null
2015-shell-genomics: Lesson for the shell for genomics
2016-adv-begin-python: See https://dib-training.readthedocs.org/en/pub/2016-04-04-adv-beg-python.html
2016-adv-begin-python-source: Code for https://github.com/ngs-docs/2016-adv-begin-python
2016-adv-begin-shell-genomics: Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html
2016-aug-nonmodel-rnaseq: null
2016-bids-docker: null
2016-bodega-cloud-kmers: Lesssons on analyzing high-thoughput sequencing datasets by counting kmers on cloud computing instances
2016-bodega-docker: null
2016-bodega-LaTeX2016: null
2016-bodega-phylogen: Files for phylogeny workshop
2016-bodega-tnseq: documentation and scripts for analyzing Tn-seq data
2016-feb-aws: null
2016-mar-jupyter: null
2016-mar-jupyter-mybinder: null
2016-mar-nonmodel: null
2016-metagenomics-sio: Metagenomics workshop at Scripps Institute of Oceanography
2016-oslo-repeatability: null
2016-short-read-trimming: null
2017-cicese-metagenomics: null
2017-cloud-workflows-misc: null
2017-davis-ggg201a-day1: null
2017-davis-ggg201a-day2: These lessons are adapted from Data Carpentry: R for data analysis and visualization of Ecological Data
2017-dibsi-metagenomics: 2017 DIBSI Metagenomics Workshop
2017-dibsi-rnaseq: null
2017-dsi-docker-may: null
2017-lapaz-assembly: null
2017-mbl-stamps: null
2017-ucsc-metagenomics: Workshop materials for shotgun metagenomics
2018-ggg201b: Class resources for Into to Genetics and Genomics 201b at UC Davis, 2018 version
2018-ggg-rstudio-bioinformatics-ws: null
2018-ggg-rstudio-bioinformatics-ws-materials: null
angus: Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
bacterial_GWAS_tutorial: Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
bioinformatics-in-the-cloud: null
edda: Source for course materials at http://ged.msu.edu/angus/
ggg-shell-genomics-ws: Data for the first few shell genomics workshop lessons from Data Carpentry
msu_ngs2015: DE analysis module for Week3
NGS2015_RMarkdown_Reproducibility: A tutorial on reproducible research using RMarkdown and RStudio
ngs-notebooks: null
ngs-scripts: scripts!
ngs-training-needs-survey: null
pydoit-intermediate: null
SKAT_NGS-2015: null
sqer-demo: null
ucdavis: Organizing things for UC Davis workshops, generally speaking.

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.