The Marcotte Lab

Login: marcottelab

Company: null

Location: Austin, TX

email:

Blog: http://www.marcottelab.org

Members

1. Alexander Boulgakov
2. Blake Borgeson
3. Claire D. McWhite
4. Dr. John Woods
5. Kevin Drew

Repositories

AG3C_starvation_tc

null

akhmetov-2016

Programs for encoding digital information as DNA.

AltProteome

Detection of alternative orfs

BioInformaticsClass_binder

Binder repository

blendomatic

Wrapper for automation of MSblender on a cluster

boolean

Boolean phenologs

crossval

Cross-validation Rails app for research

direct_contact

Code and files for direct contact prediction

fastknn

Fast k-Nearest Neighbors Calculator for crossval

FluorosequencingImageAnalysis

Fluorosequencing Image Analysis code

FluorosequencingSimulation

null

Gene-Ages

Consensus ages for genes

hmm_proteome_annotation

null

HTseq-toolbox

Tools for short read high-throughut sequencing (a.k.a. 'next-gen sequencing')

IGseeker

Codes for IG-seq project

infer_complexes

Inference, analysis and visualizations for protein complexes from co-fractionation data, used in Wan, Borgeson et al 2015

MSblender

MSblender is a statistical tool for merging database search results from multiple database search engines for peptide identification based on a multivariate modeling approach.

MS_grouped_lookup

null

MS-toolbox

Scripts for MS/MS proteomics data analysis.

Nico

null

pepliner

null

phamily

null

phenomatrixpp

Old, broken phenomatrix C++ code

phensemble

All the code for the phenolog ensemble integration stuff

pipes

Ruby on Pipes, a Ruby on Rails gem for informatics pipelines (especially bioinformatics)

plant_orthologs

Code and script and notes for creating ortholog groups for plants (arabidopsis, rice, wheat germ, fern, etc)

protein_complex_maps_public

Public repository for building and analyzing protein complex maps

Qtag

null

rocker

RubyGem for crossval which calculates ROCs very quickly using C++ and direct libpq++ DB interface

run_msblender

null

Titiwai

null

unwrap

Test code for a potential bug in rice

UVnovo

null

xenopus-seq

Sequence repository for Xenopus

xenopus-web

Website for Xenopus genome sequencing project