Jean Fan

Login: JEFworks

Company: Harvard University

Location: Boston, MA

Bio: Bioinformatics and Integrative Genomics PhD student @hms-dbmi

Blog: http://JEF.works

Blog: http://JEF.works

Member of

1. Harvard Medical School - Department of Biomedical Informatics

Repositories

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

badger

Bayesian approach for detecting copy number alterations from single cell RNA-seq data

buzzfeed-title

Your inspiration for click-bait-y bioinformatics blog titles

canvasXpressR

canvasXpressR: an R package to help you share results with collaborators using canvasXpress

Connect-The-Dots-Generator

Generate connect the dots game from an SVG image

CountClust

A R package for Grade of Membership model and Visualization of counts data:

ELIZAplus

ELIZA therapy chat-bot with sentiment detection and response via avatars

genesets

Gene Sets as R Environments

HoneyBADGER

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

InCHlib.js

InCHlib (Interactive Cluster Heatmap library)

JEFworks.github.io

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JFotography

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liger

Lightweight Iterative Gene set Enrichment in R

mondrian-generator

Random Composition in Red, Blue, and Yellow in the style of Piet Mondrian

MUDAN

Multi-sample Unified Discriminant ANalysis

NAMCShiny

An interactive web application to explore the reasons for medical visits based on the 2003-2010 National Ambulatory Medical Care Survey data

PaperLightTracer

A digital light tracer light box made using Paper.js

Patel_GBM

Inferring large copy number variations from single cell RNA-seq data

picture-quote-generator

Random picture quotes using various APIs

public-bioinformatics-datasets

Publicly available dataset for bioinformatics and integrative -omics research

pvclust-cd

Hierarchical Clustering with P-Values via Multiscale Bootstrap using Custom Distance Functions

R-Bioconductor-for-single-cell-RNAseq-data-analysis

R/Bioconductor for single cell RNAseq data analysis meetup workshop material

Risomap

fast isomap implementation for R with Rcpp

R-style-guide

Best practices for readable, sharable, and verifiable R code

scw2015

Single Cell Workshop 2015

snakefiles

Snakefiles for RNA-seq.

Supplementary-Code

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Swarmalator

Simulating self-organizing systems with a swarm of butterflies

trianglify

low poly style background generator with d3.js

tsne-online

Online web tool for t-SNE analysis and interactive exploration of algorithm parameters

ubit2

User-friendly Bioinformatics Tools

Commits To