Christopher Small

Login: metasoarous

Company: @pol-is, @thoughtnode

Location: Seattle WA, USA

Bio: Founder and head data scientist of @pol-is. Data systems consulting as ThoughtNode Software.

Blog: http://www.metasoarous.com

Blog: http://www.metasoarous.com

Member of

1. Clojure Bots
2. FHCRC Computational Biology
3. fredhutch.io
4. Matsen Group
5. Polis
6. Seajure

Repositories

arachne-hello-app

Simple arachne demo application that uses the arachne-framework/hello-module.

auspice

Fork of nextstrain/auspice for working with b-cell phylogenetics

aws-s3

AWS-S3 is a Ruby implementation of Amazon's S3 REST API

bioinfclass-sample-project

null

bioscons

Extends the scons build tool for reproducible workflows in bioinformatics.

block-puzzle

null

block_puzzle_solver

Program for computing the solutions to a specific block puzzle

boson-more

Home for boson2 plugins

Casper

The default personal blogging theme for Ghost

checkers

a game of checkers written in clojurescript using re-frame and reagent, utilizes the html5 canvas

clj-biosequence

A Clojure library designed to make the manipulation of biological sequence data easier.

clojure-datascience

Source code for the clojure-datascience.herokuapp.com website

conformity

A Clojure/Datomic library for idempotently transacting norms into your database ? be they schema, data, or otherwise

contentable

This gem streamlines the management of chunks of html (textile) content

core.matrix

core.matrix : Multi-dimensional array programming API for Clojure

core.matrix.benchmark

Benchmark and testing suite for core.matrix implementations

core.matrix.complex

Complex numerical arrays in Clojure, as an extension to core.matrix

csvkit

A suite of utilities for converting to and working with CSV, the king of tabular file formats.

data-frisk-reagent

null

datascript

Immutable database and Datalog query engine for Clojure, ClojureScript and JS

datascript-tutorial

Datascript and Datomic tutorial book

datreactor

Event and effect dispatch and handling (transactions/coordination) mechanisms for Cljc apps with DataScript databases

datspec

Protocols and specs for the Datsys architecture - the shape of things.

datsync

Datomic <-> DataScript syncing/replication utilities

datsys

(+ clj cljs datomic datascript re-frame-esque-frp)

datsys-papers-scratchpad

Simple implementations of Datsys related papers

datview

Effortlessly compose data visualizations and controls for Datomic and DataScript data

dirtybird

Like battleship, but with birds pooping on cars

dotfiles

config files for zsh, bash, completions, gem, git, irb, rails

dynamatch

Briding the gap between pattern matching and multimethods

entrez_fetch

Command line utility for downloading genbank results by accession number

forest_for_the_trees

A drop in replacement for acts_as_tree with super fast ancestors and subtree access

haml-scaffold

My own spin on the haml-scaffold pluggin created by Norman Clarke

hamltastic

let your Gemfile do the talking

instiki

A basic wiki clone so pretty and easy to set up, you?ll wonder if it?s really a wiki. (Now with DISCUSSIONS functionality! So that you can use this softwares for awesome math/science collaborations)

kappa-architecture.com

A repository of information, implementations and examples around the Kappa Architecture

LabVIEW_DIC_analysis_tool

This VI is for a tool which measures the disolved inorganic compound concentrations in water compounds - for a lab setup at the University of Wshington Marine Biology Labs in Friday Harbor, WA.

lein-clique

Makes a graph of dependencies between functions

membership_database

Membership database for the San Juan Island Coop

odum

Program for running simulations on Odum graphs

onyx

Distributed, masterless, high performance, fault tolerant data processing for Clojure

onyx-examples

Examples of using Onyx

onyx-local-rt

A pure, deterministic Clojure(Script) runtime for Onyx

onyx-seq

Onyx plugin to read from seqs (lazy or otherwise)

onyx-sql

Onyx plugin for JDBC-supported SQL databases

onyx-template

Onyx 0.6.0 Leiningen application template

oz

Data visualizations in Clojure and ClojureScript using Vega and Vega-lite

packages

Javascript libraries packaged up with Google Closure externs

PACT

Posterior Analysis of Coalescent Trees

polistest

null

posh

A luxuriously simple and powerful way to make front-ends with DataScript and Reagent in Clojure.

posterior-subset

A simple Clojure/JVM CLI for subsetting large BEAST posterior files (logfiles and treefiles)

public

home page?

rails3-templates

Rails 3 templates for rapid creation of Rails 3 applications

read_only_rubycas_server

Provides a single sign-on solution for web applications, implementing the server-end of JA-SIG's CAS protocol. Forked from the gunark branch in roder to provide read only filesystem compatibility.

re-com

A ClojureScript library of reusable components for Reagent

sanjuancoop

Home page for San Juan Island Coop

scons-tutorials

null

semantic-csv

Higher level tools for working with CSV data and files

sourcelocal

Relative code sourcing with R - eases the pain of dealing with nested code directories

strange-coop

Automatic chicken coop door opener/closer for Beaglebone Black written in Clojure

strange-coop-satellite

null

super_simple_admin

Super simple authentication, al a Ryan Bates

system

Reloaded components à la carte

system_setup

Awesome system setup magick

talk_labview

Total Alkalinity instrument automation software

textile_editor_helper

a clone of textile_editor_helper (by Dave Olsen and Chris Scharf, modded by felttippin) with enhancements

tools.cli

Command-line processing

trealnvu

Awesome tree, alignment and metadata viewer -- in browser!

tripl

This one weird trick turns JSON documents into semantic graph databases!

Vapor

A minimal, responsive theme for Ghost.

vega-lite

A concise grammar of interactive graphics, built on Vega.

vegatry

null

vim-colors-solarized

precision colorscheme for the vim text editor

vim-parinfer

rpc style parinfer plugin for vim

wiki_bot

A bot and analytic tool for investigating fundamental questions of knowledge by looking at the structure of Wikipedia articles

yaar

Yet another arduino robot - trike style

Commits To