Ben Bolker

Login: bbolker

Company: McMaster University

Location: Hamilton, Ontario

Bio: null

Blog: http://www.math.mcmaster.ca/bolker

Blog: http://www.math.mcmaster.ca/bolker

Member of

1. null

Repositories

1M

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adcomp

AD computation with Template Model Builder (TMB)

ADmarsaglia

R package wrapping Marsaglia and Marsaglia Anderson-Darling code

adv-r

Advanced R programming: a book

afex

Analysis of Factorial EXperiments (R package)

agqsims

code for simulations of adaptive Gaussian Hermite quadrature performance

asaglmm

materials for Alaska ASA GLMM workshop

bbmisc

miscellaneous talks and small projects

bbmle

maximum likelihood estimation package

betararef

compute rarefied beta diversity and simulate communities (R package)

bio3ss3

code for Bio 3SS3 at McMaster University

Bio720

Repository For graduate class (Practical introduction to Bioinformatics & Genomics). McMaster University

blme

Bayesian Linear Mixed Effect Models

broom

Convert statistical analysis objects from R into tidy format

broom.mixed

tidy methods for mixed models in R

cheatsheets

RStudio Cheat Sheets

chromogames

null

compstatsR

repository for comp-stats-in-R sessions, McMaster University

cpcbp

code for common principal components

Cppfft4

R code that facilitates computations involved in fast Fourier transforms (FFT)

cricketr

R code for evaluating stopping rules for cricket games

data-lesson-catalog

Test repo for the Data Lesson, workshop and teaching data Catalog

dec2017

null

devtools

Tools to make an R developer's life easier

directlabels

Direct labels for multicolor plots in lattice or ggplot2

discretization

opinion piece on discretization and multimodel averaging in ecological statistics

dotwhisker

Dot-and-Whisker Plots of Regression Results

drat

R repository for bbolker github packages

efficientR

Efficient R programming: a book

emdbook

R package for support of Bolker 2008 Ecological Models and Data

fitsir

null

foghorn

R package to summarize CRAN Check Results in the Terminal

GammaGompertzCR

Fit Gamma-Gompertz model to capture-recapture data using data cloning

ggally

R package that extends ggplot2

ggalt

:earth_americas: Extra Coordinate Systems, Geoms, Statistical Transformations & Scales for 'ggplot2'

ggplot2

An implementation of the Grammar of Graphics in R

git-novice

Software Carpentry introduction to Git for novices.

git_test

test

glmmadmb

generalized linear mixed models with AD Model Builder

HIV_LHS

understanding effects of contact structure on HIV virulence evolution

hmm_temphet

Hidden Markov models with temporal heterogeneity for animal movement

i-IPM

Inverse IPM project

iiscvisit

materials for visit to IISc

instructor-training

Software Carpentry instructor training course material

knitr

A general-purpose tool for dynamic report generation in R

knitr-examples

a collection of knitr examples

krakow_2018

stats course at Jagiellonian University, April 2018

Lectures

null

lme4ord

Ecological mixed-effects ordination with lme4

lunchbox

null

math1mp

materials for Math 1MP, McMaster University

math3mb

Mathematical Modelling at McMaster University

mcmcApp

R Shiny app for teaching about Metropolis Hastings

mice

Multivariate Imputation by Chained Equations

mixedmodels-misc

miscellaneous materials for mixed models, mostly in R

morelia_2018

generalized linear/mixed models workshop, Morelia 2018

mosqsamp

estimation of bird populations from blood-meal sampling

move.HMM

Flexible, user-friendly Hidden (Semi) Markov Models for animal movement data (Langrock et al. 2012)

nimbios_2017_summergrad

materials for NIMBIOS 2017 summer grad program

numpy-100

100 Numpy exercises (70 actually, we need your help...)

ottawa_mm

materials for Ottawa mixed model workshop, 24-25 Jan 2016

piecewiseSEM

R package implementing piecewise structural equation modeling (SEM)

postMCMCglmm

R package for post estimation from MCMCglmm. Predicted probabilities from MCMCglmm probit models

preddiv

models of predator functional diversity

R2admb

an R package providing an interface with AD Model Builder

R-ecology-lesson

:notebook: Data Carpentry R lessons on ecology.

redqueen

USRA 2017

remef

remef: Remove Partial Effects

RePsychLing

Data sets from subject/item type studies in Psychology and Linguistics

revdepcheck

reverse dependency checking tools

revdepcheck-1

R package reverse dependency checking

R-genomics

Lesson on data analysis and visualization in R for genomics

rjulia

R package which integrating R and Julia

rlibpkg

An R package (library) that provides the "package" command.

r-novice-gapminder

Introduction to R for non-programmers using gapminder data.

r-novice-inflammation

Software Carpentry introduction to R for novices using inflammation data.

rplos

Wrapper for the PLoS Journals API

runr

Run external programs from R (experimental)

scholar

Analyse citation data from Google Scholar

ScientificProgrammingResources

General and McMaster-specific resources

shell-novice

Software Carpentry introduction to the shell for novices.

Shiny

Shiny web applications

stat744

topics in statistics course @ McMaster

timetable

A LaTeX package for creating one-week timetables as they can frequently be found in universities or schools.

Timings

Revised version of the MixedmodelsTimings repository to back out changes

upr_2016

materials for Univ of Puerto Rico visit, April 2016

useR-machine-learning-tutorial

useR! 2016 Tutorial: Machine Learning Algorithmic Deep Dive http://user2016.org/tutorials/10.html

vegan

R package for community ecologists

wwiki

WorkingWiki / MediaWiki access via R

Zelig

A statistical framework that serves as a common interface to a large range of models.

Commits To