Thomas Cokelaer

Login: cokelaer

Company: Institut Pasteur

Location: Paris, France

Bio: null

Blog: http://thomas-cokelaer.info/

Blog: http://thomas-cokelaer.info/

Repositories

atropos

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

attic

Bunch of tools for book-keeping

bioconda-paper

Data analysis related to the bioconda paper

bioconda-recipes

Conda recipes for the bioconda channel.

biokit

Bioinformatics in Python

Biomics_M2

null

bioservices

Access to Biological Web Services from Python.

CellNOptR

null

colormap

Utilities to visualise and create matplotlib colormaps and various color codecs

conda_recipes

set of conda recipes for various tools

django-oscar

Domain-driven e-commerce for Django

easydev

Common utilities to ease the development of Python packages

easydev-feedstock

A conda-smithy repository for easydev.

euroscipy_proceedings

Tools used to generate the SciPy conference proceedings

fidgit

An ungodly union of GitHub and Figshare

FI.GDSC.ANOVA

Scripts and R functions used to perform Analysis of Variance on the GDSC1000 data, thus to identify statistical interactions between genomic features and drug response, and produce formatted results and figures

fitter

fit data to many distributions

genenetwork2

GeneNetwork (2nd generation)

gevent

Coroutine-based concurrency library for Python

graphviz4all

dot and other graphviz executable in a simple singularity container

homepage

homepage

MECAT

MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads

msdas

Package used to analyse Mass spectrometry data set

nxviz

Visualization Package for NetworkX

openalea

Official repository for OpenAlea and OpenAleaLab. Other repos in the openalea organization contain things like the website, documentation, projects, etc.

pacbio4all

pacbio tools

pbcommand

PacBio common models, CLI tool contract interface and SA3 Service Interface

pbcoretools

CLI tools and add-ons for PacBio's core APIs

pykwalify-feedstock

A conda-smithy repository for pykwalify.

pypiview

Utility to visualise the number of downloads of a package available on Pypi website

python_notes

Notes and courses about the Python langage

quast

398a470

reports

Utilities to ease the creation of HTML/PDF reports using Python language

scipy

Scipy library main repository

snakemake-days.github.io

Homepage for the snakemake days in Amsterdam 2017

spectrum

Spectral Analysis in Python

sphinx_tutorial

See README file or jump to

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

statsmodels

Statsmodels: statistical modeling and econometrics in Python

synapsePythonClient

Programmatic interface to Synapse services for Python

thomas-cokelaer.github.io

New home page

Commits To