Bruno Grande

Login: brunogrande

Company: Simon Fraser University

Location: Vancouver, Canada

Bio: I leverage computational tools to analyze genomic datasets and decipher tumour biology. I'm passionate about promoting digital literacy and open science.

Blog: http://bgran.de

Blog: http://bgran.de

Member of

1. Open Courses
2. SciProg

Repositories

2015-10-17-swc_python_workshop

Jupyter notebooks from SWC Python Workshop at SFU on 2015-10-17

2016-01-16_python_workshop

Jupyter Notebook from SWC Python Workshop taught at UBC on 2016-01-16

2016-02-02-SFU

null

2016-10-05-SFU

Programming with Python

2017-02-02-python_workshop

Code and data from Python workshop led on 2017-02-02

2017-02-02-SFU

null

authorlist

Simplify the task of maintaining a long author list and the corresponding affiliations

autoIGV

This program can take a tab-delimited text file containing bam file paths and loci and create a subdirectory of image captures for you.

bioconda.github.io

Bioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.

bioconda-recipes

Conda recipes for the bioconda channel.

bioscripts

An agglomeration of scripts I wrote to help me handle, edit and generally deal with various bioinformatic tasks.

brunogrande.github.io

My blog:

cancer_api

A Python framework and API for handling and storing cancer genomics data and metadata.

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

ensemble_caller

Perform ensemble SNV calling based on multiple algorithms

experiments

A miscellany of random experiments

galaxy_tools

A collection of Galaxy tools and workflows for performing cancer genome analyses.

git-novice

Software Carpentry introduction to Git for novices.

guild

Build a lab website in minutes to showcase your research!

homebrew-core

? Default formulae for the missing package manager for macOS

homebrew-science

:microscope: Scientific formulae for the Homebrew package manager

jekyll-now

Build a Jekyll blog in minutes, without touching the command line.

kirby-blog

Archive of my old Kirby blog

kronos

A workflow assembler for cancer genome analytics and informatics

kronos-cloud-guide

Guide for Deploying Kronos to the Cloud

lesson-github-pages

An introductory lesson for setting up a personal website blog using GitHub Pages

lesson-regex-apps

Workshop: "Applications of Regular Expressions"

my-blog

null

NC_007605

Improved EBV gene annotations (GenBank: NC_007605)

NC_007605.1

DEPRECATED (DO NOT USE)

predict_hd

Predicting heart disease project

predict_hd_bkp

null

python-novice-inflammation

Software Carpentry introduction to Python for novices using inflammation data.

r-novice-gapminder

Introduction to R for non-programmers using gapminder data.

rosalind

Solutions to problems on rosalind.info

rrr

Reproducible Research in R

seqmisc

Miscellaneous R Functions for Sequencing Data

signeR

null

StarCluster

StarCluster is an open source cluster-computing toolkit for Amazon's Elastic Compute Cloud (EC2).

starcluster-ami-config

A Packer.io configuration for building a StarCluster AMI

StarClusterPlugins

Plugins for StarCluster

svtools

Tools for processing and analyzing structural variants.

swc_setup

null

swc-setup

null

test

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tools-morinlab

Galaxy Tool Shed repositories maintained and developed by the Morin Lab.

training-prep-2015-09

Instructor training preparation, September 2015

vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

workshop-template

Template for workshop websites.

XYalign

Inferring sex chromosome and autosomal ploidy in NGS data

Commits To