Evguenia Kopylova
Login:
ekopylova
Company:
null
Location:
Clarity Genomics, Janssen Pharmaceutica Campus, Beerse, Belgium
Bio:
null
Blog:
https://sites.google.com/site/kopyloe/
Blog:
https://sites.google.com/site/kopyloe/
Repositories
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benchmarks
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null
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biom-format
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The Biological Observation Matrix (BIOM) Format Project
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burrito-fillings
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Application controllers for command line bioinformatics applications
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Complete-Striped-Smith-Waterman-Library
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null
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conda-recipes
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conda recipes for bioinformatic tools like blast+, infernal, etc.
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deblur
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null
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deblurring
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null
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distance-method
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Python implementation of the Distance Method HGT search algorithm
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emp
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Data, code and analysis results for the Earth Microbiome Project.
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emperor
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Emperor a tool for the analysis and visualization of large microbial ecology datasets
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hgt_analysis
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Scripts for HGT analysis
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MultiQC_TestData
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Test data for MultiQC. See https://github.com/ewels/MultiQC
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NINJA-OPS
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Ninja Is Not Just Another OTU Picking Solution
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OrthoFinder
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Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"
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OTU-clustering
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Scripts for benchmarking and comparison of short read OTU clustering tools available in QIIME
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phylomizer
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PhylomeDB automated pipeline for reconstructing high-quality phylogenetic tree
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qiime
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Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests
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qiime-deploy
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Tool to easily install QIIME on Linux systems
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qiime-deploy-conf
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configuration files to be used with the qiime-deploy packages
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scikit-bio
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Core objects, functions and statistics for working with biological data in Python.
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script_bin
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A collection of potentially useful scripts
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short-read-tax-assignment
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A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools
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sortmedna
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Development version of SortMeDNA
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sortmerna
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This is ongoing development of SortMeRNA. For the latest release, see http://bioinfo.lifl.fr/RNA/sortmerna/.
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tcga
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TCGA analysis
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tcga-1
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Microbial analysis in TCGA data
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WGS-HGT
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Workflow for detecting genome-wide horizontal gene transfers
Commits To