Aroon Chande

Login: ar0ch

Company: Applied Bioinformatics Laboratory

Location: null

Bio: Bioinformatics Scientist at the Applied Bioinformatics Laboratory (http://abil.ihrc.com/) and PhD student in the Jordan Lab at Georgia Tech

Blog: https://aroonchande.com

Blog: https://aroonchande.com

Repositories

8803b-2015

8803b files

achande3.prism.gatech

prism.gatech.edu files

AlignGraph

Algorithm for secondary de novo genome assembly guided by closely related references

ar0ch.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

bioconda-recipes

Conda recipes for the bioconda channel.

BIOL-4150

null

chocolatey-ncbi-blast

A template to use when setting up to create packages both manual and automatic

CS4710

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cv

Latex markup for my CV: https://aroonchande.com/cv

DesktopDeployR

A framework for deploying self-contained R-based applications to the desktop

docker_mlst

Docker containers for running MLST software

dotfiles

kui's dotfiles and scripts

EDGE

EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

examples

Simple guided examples of how to use Caddy

gitignore

A collection of useful .gitignore templates

git-remote-dropbox

A transparent bridge between Git and Dropbox - use a Dropbox (shared) folder as a Git remote! :gift:

goldilocks

Locating genetic regions that are "just right"

GOTTCHA

More details and updates can be found in our homepage and LANL-Bioinformatics Github site (https://github.com/LANL-Bioinformatics/GOTTCHA). Please visit our homepage at

hammerlab_scripts

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macsyfinder

MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.

metapathways2

MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds

mic_prediction

Code for doing MIC predictions on genomes

Microscope

Interactive heatmap visualization software using RShiny and JavaScript (D3.js)

NASP

Northern Arizona SNP Pipeline

nthi_project

Collection of data and methods for my NTHI classification project. Jordan Lab, Georgia Institute of Technology. Summer 2016

pileup.js

Interactive in-browser track viewer

pip

The PyPA recommended tool for installing Python packages

pipeline_scripts

Pipeline scripts for gene assembly

RampDB

null

snap-mcmc

Automatically exported from code.google.com/p/snap-mcmc

sovereign

A set of Ansible playbooks to build and maintain your own private cloud: email, calendar, contacts, file sync, IRC bouncer, VPN, and more.

StriDe

StriDe Assembler

stringMLST

Fast k-mer based tool for multi locus sequence typing (MLST)

traitar

From genomes to phenotypes: Traitar, the microbial trait analyzer

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

wiki-presentation

Files, images and errata for wiki or presentation assets. To upload to http://compgenomics2016.biology.gatech.edu

Commits To