Fábio Madeira

Login: biomadeira

Company: EMBL-EBI

Location: Cambridge, UK

Bio: PhD/Postdoc in Bioinformatics @bartongroup, now Software Engineer @ebi-wp.

Blog: http://biomadeira.github.io

Blog: http://biomadeira.github.io

Member of

1. EBI Web Production
2. Geoff Barton's Computational Biology Group
3. Jekyll themes & plugins & Frontend

Repositories

2013-12-16-dundee

Website and course materials for the Software Carpentry boot camp held at Exeter on the 14 November 2013

bioconda-recipes

Conda recipes for the bioconda channel.

BioDownloader

? A Command Line Tool for downloading protein structures, sequences and MSAs

biomadeira.github.io

Personal homepage

book-experiment

Experimental book using bookdown

build-your-own-x

? Build your own (insert technology here)

cathAnalysis

null

citation-network-explorer

Tool for exploring local citation networks.

CodeReview

Python example program for Code Review (13.11.14)

containers

Bioinformatics containers

containers-rules-manuscript

Recommendations to contenarized your bioinformatics software

dockerfiles

Docker Tools and Workflows

gae_bib2yaml

Python code deployed to GAE

gae_papersetal

Python code deployed to GAE

gae_pubmed2rss

Python code deployed to GAE

homebrew-biotools

Home for some bioinformatics homebrew formulae used in my work ??

jekyllthemes

A directory of the best-looking themes for Jekyll blogs

Open-Chemera

Open source Chemera

Packt-Publishing-Free-Learning

Scripts that automatically claim and download free daily eBooks from https://www.packtpub.com/packt/offers/free-learning

pycma

PyCMA - A Python Module for Correlated Mutation Analysis

pycoevol

A Python workflow to study protein-protein coevolution and interaction

pymsa

Some Python routines to work with Multiple Sequence Alignments (MSA)

pyPDBeREST

A python wrapper for the PDBe REST API

resume

Personal resume

rmsd

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

r-novice-inflammation

Software Carpentry introduction to R for novices using inflammation data.

rscripts

A bunch of R scripts for training/testing SNNS neural networks

sbr

Structural Bioinformatics Resources

Slivka

null

Commits To