Bastian Greshake Tzovaras

Login: gedankenstuecke

Company: @openSNP & @OpenHumans & Ex-@BIONF

Location: Berkeley, CA, USA

Bio: meddling with the scientific method

Blog: http://ruleofthirds.de

Blog: http://ruleofthirds.de

Member of

1. Mozilla Science Lab
2. Open Humans Foundation
3. openSNP
4. Open Source for Open Scholarship
5. null
6. null

Repositories

2018_nih_datascience_rfi

This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science

3D

Selbstgemachte Projekte mit 3D im Dorf

activity_tracking

null

bioinf-junk

Mainly simple & stupid text-parsers for blast-jobs

blink1_morse

Great: Translates text into flickering lights!

BloodVoyage

Markov Bot mixing Darwin & McCarthy

bosc15-poster

Poster for the Bioinformatics Open Source Conference 2015

bosc2015

Content from BOSC2015 unconference sessions on building successful open source bioinformatics communities

build-a-binder

Increase the number of people publishing educational, journalistic, and scientific materials that enable readers to read, edit, re-run and re-use that content. Using mybinder.org

business_cards

Randomly generates unique, colourful business card templates.

catsay

:cat: :computer: Cats in your $SHELL

CGP-scripts

Resources for the Caenorhabditis genome project

ChangeCLIA

null

chatanalysis

data sci fun you can have with chatlogs

circlator

A tool to circularize genome assemblies

cluster-pipline

null

command_line_bootcamp

:computer: command-line bootcamp adventure in your browser

compare_23andme

null

correspondence

The correspondence with journalists

emojis

files to supplement emoji data science tutorial at prismoji.com/emoji-data-science-in-r-tutorial

ENGAGE-submission

Submission for ENGAGE-project

EntrezFetchr

Small Django project which uses BioPython to fetch Sequences & Publications out of NCBIs Entrez

fitbit-rails-test

null

ftdna-upload

Add FamilyTreeDNA as an OH datasource

gchat_analysis

null

gedankenstuecke.github.com

null

genomeskimming

scripts for the genome skimming paper

genotype_relatedness

null

genotyping_23andme

My raw genotyping data from 23andme

geolocations

getting geo locations from twitter archives/swarm

global-sprint

Mozilla Global Sprint 2017

good_puppeRs

Downloading rated dog pictures from @dog_rates

healthkit-sample-generator

Export/Import/Sample Generator for HealthKit Data (Swift + UI)

I-accidentally-a-social-scientist

null

impactstory-tng

Impactstory: the next generation

indigo

:ramen: Minimalist Jekyll Template

intervention

An intervention to increase intentionality

jgiposter2015

My Poster for the 2015 JGI User Meeting

kegg-miner

getting data out of KEGG w/o any subscription

leadership-training

12 week online mentorship program on Working Open starting September 2017

leeHom

Bayesian reconstruction of ancient DNA fragments

magnus

A bot to remind me of my own mortality (and other useful facts such as the weather)

microbiome

My uBiome bacteria counts and raw sequencing reads

microbiome-data

For anyone who wants to share and compare their microbiome data.

microsporidia

null

minima

Minima is a one-size-fits-all Jekyll theme for writers.

MinoritiesInResearch

How does research treat underrepresented minorities?

my_goodreads_shelves

Some people on GR have complained that their reviews disappear and I feel (but don't know) that I lost at least one, this tracks my exported CSV to check whether it actually happens

ncbi-hackathons.github.io

NCBI Hackathon Repos

neurosexism-paper

null

noti

Trigger a notification when a terminal process finishes.

OCRFix

Get around bad OCR-Code-Detection

oh-data-demo-template

Template and working demo for adding data to an Open Humans project. Python 3; Django 2.

oh_data_uploader

null

oh-fitbit-integration

Standalone Fitbit integration for Open Humans

oh-rescuetime-source

null

Onboarding

This repository contains the onboarding resources and exercises that are recommended for when you join the Whitaker Lab.

open-humans

Powering openhumans.org

OpenHumansDataTools

tools to work with data downloaded from Open Humans research platform

opensnp_freqs

null

opensnp-fun

Playing around with data in openSNP

opensnp_misc

A collection of secondary scripts for openSNP stuff (plotting etc.)

opensnp.org-docker

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orthofiller

null

osf-cli

A python library and command-line client for file storage on OSF

OSRR_course

The Open Science and Reproducible Research course

outreachy-django-wagtail

The shiny brand new website for Outreachy, based on Django with the Wagtail CMS plugin.

PhyloProfile

phylogenetic profile analysis tool based on R Shiny

phyloprofile_slides

PhyloProfile tool presentation

pOrNtology

grabbing tag data from xnxx & youporn

python-evol-genomics

slides used for a 30 min talk about python for biologists

python-novice-inflammation

based on https://github.com/swcarpentry/python-novice-inflammation

recomb15-poster

null

repodoctor

Check your repository health

scienceisglobal

null

scihub

Code for Looking into Pandora's Box: The Content of Sci-Hub and its Usage

scihub_analysis

Analyzing the April 2016 Data about the Usage of Sci-Hub

scihub-manuscript

Manuscript for https://github.com/greenelab/scihub

sickle

Windowed Adaptive Trimming for fastq files using quality

smbe15-poster

My Poster for the SMBE15

snpr

The sources of the openSNP website

sphinx-markdown-test

Repo for testing Sphinx with RST & Markdown

talk_spack0

Talk for 0. Spackeriade

taxize

A taxonomic toolbelt for R (https://ropensci.github.io/taxize/)

terrier

Pull meta information from scholarly articles

Twirssi2RSS

Use the Twirssi-Logfile to create an RSS-Feed of most popular links

twitter-analyser

export data from twitter archive and visualize it

twitter_backup

small rails-project to store, visualize and search my tweets

VelvetOptimiser

Automatically optimise three of Velvet's assembly parameters.

workshop-hongkong2015

my contribution to a genomics workshop at MakerBay.

WOW-2017

Mozilla Science Lab's Working Open Workshops in 2017

Commits To