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Sebastian Schmeier

Login: sschmeier

Company: Massey University

Location: null

Bio: null

Blog: http://sschmeier.com

Member of

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Repositories

2015-11-03-albany: 2015-11-03-albany
2016-01-28-training-prep: null
2017-04-10-Albany: null
2018-02-14-Albany: null
A-Journal-List: My non-comprehensive collection of "good guys" journals within my field of research (bioinformatics, computational biology, molecular biology, immunoinformatics, and related). Non-profit or Society or University press + open access option.
beanplot: Beanplots on the command-line via Python
bioconda-recipes: Conda recipes for the bioconda channel.
bioinf-install: null
bioinf-workshop: null
biotools: A Singularity container definition for Singularity Hub and a turorial on reproducibility in computational biology.
cookie-bs3: A cookiecutter bs3 template.
cookie-bs4: A quick bootstrap4 project template
cookie-latex-article: Cookiecutter latex article template
cookie-latex-letter: Cookiecutter latex letter template
cookie-python-minimal: null
cookie-python-mp: Cookiecutter for a python file enabling multiprocessing.
cookie-snakemake-workflow: A Snakemake workflow template
datasets: This is a non-comprehensive collection of data sources of interest to us for quick lookup and collaborative sharing.
django-docker: Production-ready Django on Docker
elearningcollection: A collection of random and not so random online learning materials for biology, computation, and bioinformatics
genomics-tutorial: An introductory tutorial into genomics.
git-novice: Software Carpentry introduction to Git for novices.
hhrun: Wrapper for hhsearch
irndb2: Source of IRNdb.
kraken-analysis: Process many fasta-files with Kraken. Post-process kraken results.
matplotlib_solarized: Simple python matplotlib colormaps based on the solarized color palette by Ethan Schoonover
mdRefGen: Simple script to parse all references / links / citations from a markdown-file and append them as a bibliography / references to the markdown-file. It is not very versatile so far but works nevertheless. It is NOT however a way to encapsulate your reference-files (e.g. bibtex etc.) in markdown.
metagenomics-scripts: null
mpRun: Simple script to run ONE command on SEVERAL files in parallel processes using multithreading.
ngs-scripts: Some scripts/ no warranty, check before you use them
notes: Quick note taking on the unix command-line.
python2-swc: All files for teaching SWC python module (Python 2). Thus, participants can clone this via git and are ready to go.
python-novice-inflammation: Software Carpentry introduction to Python for novices using inflammation data.
refseq2kraken: Download refseq-genomic data and prepare it for Kraken
sandbox: Play around in the sandbox
scholar_ranking: Quick hack to extract all scholars and citations of an organisation from Google Scholar
shell-novice: Software Carpentry introduction to the shell for novices.
sql-ecology-lesson: Lesson on using SQL for ecology
templates: Template files for various purposes.
working-reproducible-tutorial: null

Commits To

Repository	Most Recent Commit	# Commits

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.