Guangchuang Yu

Login: GuangchuangYu

Company: The University of Hong Kong

Location: Hong Kong

Bio: I am a postdoc researcher in School of Public Health at The University of Hong Kong.

Blog: https://guangchuangyu.github.io

Blog: https://guangchuangyu.github.io

Member of

1. Bioconductor
2. Infectious Disease Bioinformatics Group
3. Rbind
4. null

Repositories

badger

Badge for R Package

base2grob

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bigbaby

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bioc-release

release version of my Bioconductor packages

biostar-handbook-web

Online companion for the Biostar Handbook.

bioSyntax

Syntax highlighting for computational biology

biotools

A list of useful bioinformatics resources

bitr

Biological Id TranslatoR

blog_images

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bookmarks

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chinamap

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ChIPseeker

:dart:ChIP peak Annotation, Comparison and Visualization

clifun

UNIX command line funny stuff in R

clusterProfiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

cn

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comp-genomics-class

Code and examples for JHU Computational Genomics class

cowsay

cowsay w/ more animals in R

dlstats

:arrow_down:download stats of R packages

DOSE

:mask:Disease Ontology Semantic and Enrichment analysis

drat

Repo for my R packages

emojifont

:lollipop:Emoji and fontawesom in both base and ggplot2 graphics

enrichment4GTEx_clusterProfiler

reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE

enrichplot

Visualization of Functional Enrichment Result

exploratory-phylodynamics

Exploratory phylodynamics

featured_img

featured images for gh-page of my packages

fgsea

Fast Gene Set Enrichment Analysis

frog_tree

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gallery

Gallery of ggplot2 extensions

GeLL

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ggalt

:earth_americas: Extra Coordinate Systems, Geoms, Statistical Transformations & Scales for 'ggplot2'

gggenes

???????????? Draw gene arrow maps in ggplot2

ggimage

:art: Use Images in ggplot2

ggmsa

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ggplotify

ggplot everything

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

ggtree-book

:book:The ggtree book

ggtreeghost

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GOSemSim

:golf:GO-terms Semantic Similarity Measures

GuangchuangYu.github.io

Guangchuang's blog

hexSticker

:sparkles:Hexagon sticker in R

HKU_PhD_Thesis_Template

This is a XeLatex template for PhD students of The University of Hong Kong.

hugo-academic

An academic staff/student website theme for Hugo

hugo-material-docs

Port of Martin Donath's mkdocs-material theme to Hugo

Hugo-Octopress

Port of the classic Octopress theme to Hugo

In-depth-NGS-Data-Analysis-Course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

jebl2

Automatically exported from code.google.com/p/jebl2

jobs

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JplaceExporter

phylogenetic placement format (jplace) exporter

kableExtra

Construct Complex Table with knitr::kable() + pipe

labs

Rmd source files for the HarvardX series PH525x

libnewicktree

A standalone Newick tree reader in Java

meme

create meme

MERS

Analyses of MERS-CoV outbreaks

MERS_recombination

Does MERS-CoV recombine?

meshes

MeSH Enrichment and Semantic analyses

mevr

Molecular Epidemiology of Viruses in R

microbiomeViz

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mlass

:boom:Machine Learning clASS

ML_for_Hackers

Code accompanying the book "Machine Learning for Hackers"

Omega_MutSel

Code and data for Spielman and Wilke, The relationship between dN/dS and scaled selection coefficients, Mol. Biol. Evol. 2015.

paper-zhang2014

Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26

pheatmap

Pretty heatmaps

phylodynamic-notebook

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phylogeneticbiology

syllabus and lectures for the course

phylo_notebook

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phylotastic-portal

Web tool (ruby on rails) providing access to phylotastic services for acquiring species trees.

plotTree-ggtree

ggtree version of plotTree.R

presentation

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Princeton-Algorithms-Java

My solutions to Robert Sedgewick's fantastic Princeton courses on Algorithms/Data Structures (http://algs4.cs.princeton.edu/home/) and Intro to Programming in Java (http://introcs.cs.princeton.edu/java/home/)

pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

ReactomePA

Reactome Pathway Analysis

res4flu

Resources for Influenza Research

resume

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RevBayes-NIMBioS-Workshop

Info and materials for the RevBayes workshop held at NIMBioS

roweb2

rOpenSci website

rvcheck

:white_check_mark:R/Package Version Check

rweekly.org

R Weekly

scatterpie

:art:scatter pie plot

seqcombo

sequence recombination visualization

seqmagick

sequence manipulation

shadowtext

shadow text for grid and ggplot2

skleid

State Key Laboratory of Emerging Infectious Diseases

slack-emoji-pokemon

Slack Pokemon Emojis

software

information of my software packages

statistics_notes

Y??????

stat-learning

Notes and exercise attempts for "An Introduction to Statistical Learning"

stringAlgorithm

for practice only

StringAlgorithms

Some string algorithms, from Dan Gusfield's "Algorithms on Strings, Trees and Sequences" and elsewhere

tidytree

:shower:A Tidy Tool for Phylogenetic Tree Data Manipulation

treeio

:seedling:Base Classes and Functions for Phylogenetic Tree Input and Output

twemoji

Twitter Emoji for Everyone

UpSetR

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

wordpress-related

wordpress theme or plugin modifications

ygc-utilities

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yyplot

Guangchuang Yu's Plot Utilities

Commits To