Sampo Pyysalo

Login: spyysalo

Company: University of Cambridge

Location: null

Bio: null

Blog:

Blog:

Member of

2. Cambridge Language Technology Lab
3. The Natural Language Processing Laboratory
4. Tsujii Laboratory
5. Universal Dependencies

Repositories

annodoc

Annodoc annotation documentation support system

annodoc-demo

null

bc2gm-corpus

Work related to the BioCreative II Gene Mention corpus

bionlp_st_2011_supporting

Supporting resources and a replicable pipeline for the BioNLP Shared Task 2011 data

chemdner-corpora

Work related to the BioCreative CHEMDNER corpora

conlleval.py

Python version of the evaluation script from CoNLL'00-

conllu.js

CoNLL-U format library for JavaScript

conllu.py

CoNLL-U format library for Python

corpora

Repo mostly for issues in corpora I'm involved with, also maybe some corpus data at some point.

craft

Material relating to work on the CRAFT corpus.

crfsuite

CRFsuite: a fast implementation of Conditional Random Fields (CRFs)

crfsuite-tools

Tools for working with CRFsuite (http://www.chokkan.org/software/crfsuite/)

crf-test

Keras CRF experiments

genia-pos

GENIA corpus v3.02 part-of-speech annotations (GENIA tagger variant)

hoccorpus

Tools for the Hallmarks of Cancer corpus

interleave-layer

Special-purpose Keras layer for merging word and dependency vectors for relation classification

jekyll-hook

trigger jekyll deployment by github webhook event

jnlpba

Tools and resources related to the JNLPBA corpus

keras

Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano and TensorFlow.

knowtator2oa

null

knowtator2standoff

Knowtator to standoff format conversion for CRAFT corpus

linnaeus-corpus

Work related to the LINNAEUS corpus

MutationFinder

Tools for the MutationFinder corpus (http://mutationfinder.sourceforge.net/)

ncbi-disease

NCBI disease corpus - related resources

nersuite

null

nxml2txt

NLM .nxml to text format conversion

pmccite

Extract pretty-printed article citation from PMC .nxml file

ptb2conll

Convert PTB format into simple CoNLL-like format

ptb2oa

Convert Penn Treebank format into Open Annotation format.

pubannotation.py

Python library for PubAnnotation

pubmed

Tools for working with PubMed data.

pubtator

PubTator tools

pyhttp

Experiments with python HTTP server

restful-oa

RESTful Open Annotation

s800

Tools for working with the S800 corpus

sols

soft-matching ontology lookup service

standoff2conll

Conversion from brat-flavored standoff to CoNLL format

standoff2pa

Conversion from brat-flavored standoff to PubAnnotation format

tagger

Named Entity Recognition Tool

textseg

Some text segmentation stuff

tokens-x-mesh

Create cross-product of tokens and MeSH terms from data extracted from PubMed.

unicode2ascii

Unicode to ASCII converter tuned for biomedical text

wikiextractor

A tool for extracting plain text from Wikipedia dumps

wsserver

WebSocket server test

wvlib

word vector library

Commits To