CD2H gitForager

Carlos Hern�ndez

Login: cxhernandez

Company: @pandegroup

Location: null

Bio: PhD Student @Stanford and Researcher @FoldingAtHome

Blog: http://www.cxhernandez.com

Member of

Repositories

alpinecuda: dockerfile for the manomarks/alpinecuda repository
amd_sdk: Install script from AMD SDK (OpenCL) on Debian/Ubuntu/Mint
asr-pipeline: A software pipeline for aligning sequences, inferring ML phylogenies, reconstructing ancestors, and more
beast2: Bayesian Evolutionary Analysis by Sampling Trees
bioservices: Access to Biological Web Services from Python.
cbang: C! (cbang) is a library of cross-platform C++ utilities.
cellcount: A Convolutional Neural Network for Segmenting and Counting Cells in Microscopy Images
checkTrajectoryImaging: A python script that finds trajectories with possible imaging errors
chemistry: chemistry tables and formulas
chemlab: The chemistry library you were waiting for
chemview: The new generation molecular viewer for IPython notebook
conda-buildpack: Buildpack for Conda.
conda-recipes: conda build recipes for the Omnia project
contactmapper: create custom atomic contact maps from PDB data
corner.py: Make some beautiful corner plots.
craneophoto.com: Photography Website
cxhernandez.com: Personal Webpage ?
damon2mars: send Matt Damon back to Mars:
deepchem: Deep-learning models for Drug Discovery and Quantum Chemistry
deepchem-gui: A simple web GUI for DeepChem
docker-fah-work: Dockerfile to run the Folding@home Work Server
fahbadge: null
fah-bot: fah-bot
fah-map: Beautiful maps of Folding@home network activity ?
fah-project-announce: Generates an RSS Feed of newly released beta projects for the Folding@home Slack Team
FastMaskRCNN: Mask RCNN in TensorFlow
findBindingEvents: Find ligand binding events in large sets of MD trajectories using Bayesian Statistics
GLmol: A molecular viewer written in Javascript and WebGL
GPflow: Gaussian processes in TensorFlow
GPy: Gaussian processes framework in python
heatcanvas: Pixel based heatmap with html5 canvas.
hmmlearn: Hidden Markov Models in Python, with scikit-learn like API
icml18-jtnn: null
ino: Command line toolkit for working with Arduino hardware
ipymol: Control PyMOL sessions via IPython
istar: istar is a software-as-a-service platform for bioinformatics and chemoinformatics.
jointplot-d3: Generate stylized 2D density plots with marginals in d3
JSNetworkX: A port of the graph library NetworkX to JavaScript
JVHW_Entropy_Estimators: MATLAB and Python 2.7/3 Implementations of the JVHW entropy and mutual information estimators in Jiao, Jiantao, Kartik Venkat, Yanjun Han, and Tsachy Weissman. "Minimax estimation of functionals of discrete distributions." IEEE Transactions on Information Theory 61, no. 5 (2015): 2835-2885.
mapper: Implementation of Mapper Algorithm
md-cookbook: Get cookin' with molecular dynamics made from scratch
mdentropy: Entropy calculations for MD data
mdtraj: A modern, open library for the analysis of molecular dynamics trajectories
molencoder: Molecular AutoEncoder in PyTorch
mpld3: D3 Renderings of Matplotlib Graphics
msmb_data: Testing data for MSMBuilder
msmbuilder: Statistical models for biomolecular dynamics
msmbuilderMPITools: Make MSMs for protein-ligand system with parallelized RMSD clustering, featurization, and state assignment.
msmexplorer: Visualizations for statistical models of biomolecular dynamics
msmreport: Create reports for MSMs generated using Osprey
mtx2JSON: Convert a sparse MSM adjacency matrix into a JSON-formatted graph
mutinf-view: Pretty Chord Diagrams for Mutual Information ?
openmm: OpenMM is a toolkit for molecular simulation using high performance GPU code.
OpenTDA: Open source Python library for topological data analysis (TDA)
osprey: osprey is the plumbing for machine learning hyperparameter optimization.
ParmEd: Parameter/topology editor and molecular simulator
pcled: Control your Arduino's LED strip through your PC
pix2pix-tensorflow: Tensorflow port of Image-to-Image Translation with Conditional Adversarial Nets https://phillipi.github.io/pix2pix/
plumed2: Development version of plumed 2
pokedata: null
Pokemon_Go_API: Pok�mon GO API in Python
PokemonGo-Map: ? Live visualization of all the pokemon in your area... and more!
project-lazarus: Automatically exported from code.google.com/p/project-lazarus
Protocols: These are my protocols n they are mine but they can be yours too
pycogent: PyCogent: Official repository for software and unit tests
pytorch: Tensors and Dynamic neural networks in Python with strong GPU acceleration
pytorch-rbm: Restricted Boltzmann Machines (RBMs) in PyTorch
pytorch-wavenet: An implementation of WaveNet with fast generation
seaborn: Statistical data visualization using matplotlib
SIMPLEchangepoint: null
slack-butler: An easily deployable webapp that automatically registers and invites users to your slack team
slidedeck: Beautiful HTML5 slides in markdown. A easy-to-use fork of the google-io-2012 slide deck
snap-python: SNAP Python code, SWIG related files
vde: Variational Autoencoder for Dimensionality Reduction of Time-Series
vsp-fah-status: Creates an RSS Feed with updates on the availability of vsp-fah for benchmarking
whedon: Command-line utilities to manage JOSS submissions. May one day be a sentient being.

Commits To

Repository	Most Recent Commit	# Commits

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.