Konrad Förstner

Login: konrad

Company: University of Würzburg

Location: Germany

Bio: Bioinformatician/Computational Biologist, Open [Source|Data|Access|Science|*] enthusiast, Coder, CLI ninja, ORCID: 0000-0002-1481-2996

Blog: http://konrad.foerstner.org

Blog: http://konrad.foerstner.org

Member of

2. OFKN Open Science AG
3. Software Carpentry
4. WikiProject Open Access
5. Würzburg Unseminars in Bioinformatics and Systems Biology

Repositories

2014-EGI_READemption_Webinar

Scripts for the Webinar "RNA-Seq analysis with READemption - Setup and usage in the EGI Federated Cloud"

2017-03-29-munich

Website of the Software Carpentry Workshop at the Technical University Munich 2017-03-29

2017-03-29-Software_Carpentry_Munich_Teaching_Material

Teaching Material of the Software Carpentry Munich 2017-03-29

2017-05-10-Hannover_S3_talk_slides

Talk slides of my a talk at the 2nd Conference on Non-Textual Information ?Software and Services for Science (S3)?

2017-SS-Course-Machine_Learning_in_Bioinformatics

Material of the course "Machine Learning in Bioinformatics" (2017 Summer semester)

2018-01-10-RNA-Seq-Workshop_Guwahati

RNA-Seq workshop material

2018-01-23-Intermediate_Scientific_Computing_Skills_Munich

null

2018-04-19-A_short_Python_overview_for_scientists

A short Python overview for scientists

2018-05-09-Workshop_Machine_Learning_for_Biologist_Mumbai

Machine Learning for Biologists

ANNlightenment

A tool to store genome annotation and information about molecular interaction in a Wikibase instance

annotation_helper_web_app

Small flask-based web app to help in genome annotation

APRICOT

A tool to explore RNA binding proteins.

Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

bears_analyses

Examples of kallisto + sleuth

Binomialtest

Kleines Beispiel zu Binomialtest und Binomialverteilung

Bioinformatical_Python_Libraries_tutorial

null

bioinformatics

Tools for bioinformatics

biopython

Official git repository for Biopython (converted from CVS)

BMC-author-extractor

Extracts journal and author information from a BMC article XML files and prints them to the standard output.

bosc2015

Content from BOSC2015 unconference sessions on building successful open source bioinformatics communities

charcoal-konrads-version

A slightly modified version of the Charcoal theme which is shipped with Habari.

Code_of_Conduct

Code of conduct - IMIB bioinformatics group / Core Unit Systems Medicine

Collaborative-platforms-for-streamlining-workflows-in-Open-Science

A manuscript for a OKCon 2011 publication

couchdb-benchmarking

This is a tiny script to test CouchDB's disk space usage depending on the settings.

COVERnant

COVERnant - A tool to generate and manipulate coverage plots of high-throughput sequencing data.

git-novice

Software Carpentry introduction to Git for novices.

gitpaper

My awesome paper

GRADitude

GRADitude - The GRAD-Seq data analysis tool

hello-world

AD

HiC-Pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

HTC-Desire-holder

LeoCAD model of a HTC Desire holder built of LEGO(TM)

Introduction_to_the_Unix_Shell_for_biologists

Introduction to the Unix Shell for biologists

JATS-to-Mediawiki

A PubMed Central to MediaWiki converter

joss

The Journal of Open Source Software

kuf_bio_scripts

A collection of small Python scripts used for miscellaneous bioinformatical tasks.

kufpybio

A collection of Python classes and functions frequently used by me in bioinformatical data processing

KUFs_bioinformatical_tools_Dockerfile

A Dockerfile for collection of bioinformatical tools

Lab_Knowledge_Base

A small collection of useful tutorials and links

LaTeX-beamer-talk-template

This is my template document for creating slides shows with LaTeX and its beamer package.

Literate_Programming_with_Emacs_Org-mode_Babel_example

Literate Programming with Emacs Org-mode Babel example

Markdown_CSL_BibTeX_manuscript_template

Template to use Makedown, CLS and BibTeX to write academic publications

matplotlib

matplotlib: plotting with Python

MediaWiki-PubmedParser-Extension

null

mw4bio

MediaWiki extenstions for Bioinformatics

oarr-compendium

Compendium of the "state of the art" in the philosophy and practice of Open Access and Reproducible Research

open-access.net-Fachseite-Biologie

Die fachspezifische Seite für Biologie für open-access.net

openpetitionparser

OpenPetitionParser

Open-Science-Radio

Shownotes zu den Episoden des Open Science Radios (Podcast)

openscienceradio-figshare-uploader

OpenScienceRadio-Figshare-uploader

Open_Science_Workshop_Toolbox

A collection of resources and ideas for running workshops/seminar about Open Science

pelican-plugins

Collection of plugins for the Pelican static site generator

project_generator

null

python-guide

Python best practices guidebook, written for Humans.

python-novice-inflammation

Software Carpentry introduction to Python for novices using inflammation data.

READemption

a pipeline for the computational evaluation of RNA-Seq data

RUVSeq

Development repository for RUVSeq

slideshows

Sildeshows related to Software Carpentry

SSH_tutorial

SSH tutorial

STAR

RNA-seq aligner

tech-interview-handbook

? Algorithms, front end and behavioral content for rocking your coding interview. ? Interview Cheatsheet! ?

termux_configs_and_scripts

termux configuration files and scripts

training-course

Instructor training course

ubuntu_image_customization_script

Ubuntu image customization script

website

Software Carpentry website

workshop-template

Template for workshop websites.

Commits To