Daniel Mietchen

Login: Daniel-Mietchen

Company: null

Location: Jena

Bio: null

Blog: http://about.me/daniel.mietchen

Blog: http://about.me/daniel.mietchen

Member of

1. Data Science Institute at the University of Virginia
2. FAIR Data Expert Group
3. JATS4R
4. Joint Roadmap for Open Science Tools
5. WikiProject Open Access

Repositories

2015-11-19-public-nidata

null

2016-aesir

Just an archival copy of https://github.com/ctb/2016-aesir

2030

A collection of thoughts on how science communication might (or should) look like in 2030

3D-embeds-in-PDF

Some examples for embedding 3D and multimedia files into PDF by way of LaTeX

3dprintyourbrain

How to 3D print your brain from a T1 MRI image.

alm

Article-Level Metrics - Alternative Measures to Gauge the Impact of Research

backend

The code that runs the website, which is where the API sits

baleen

Live stream of DOI citations in Wikipedia

BDK16-Semantic-Data-Interoperability

BD2K Module 16

bioinformatics

Tools for bioinformatics

bouchout

Notes on progress related to putting the Bouchout Declaration into practice.

brat-citizenscience

brat rapid annotation tool (brat) - for all your textual annotation needs

bug-cruncher

We come to crop and sort insects.

citation-bot

Citation Bot from Toolserver, has a branch to port to Labs

clock_evo

This repository contains all the files for the circadian clock evolution experiment using AVIDA

cocytus

produce a stream of citiation data coming off wikimedia

codeeu.github.io

Main Europe Code Week website with static resources.

Collaborative-platforms-for-streamlining-workflows-in-Open-Science

A manuscript for a OKCon 2011 publication

Commons2Data

Transpose semantic of commons categories into wikidata statements

contentmine.github.io

ContentMine installation instructions website

CONTRIBUTING.md

Example inclusive contribution guidelines for open source projects

crisiscleanup

Crisis Cleanup on Rails and PostgreSQL

data1

Data from Jeff Rouder's Perception and Cognition Lab at the University of Missouri

datacarpentry.github.io

Website repo

data-citation-workshop-2014

strawman xml tagging examples

datascience

Keeping track of activities around research data

docs

The OpenTrials documentation.

egonw.github.com

Personal Homepage

ekansa-pubs.github.io

Publication drafts for public review

elife-articles

xml of elife articles

Encyclopaedia-of-original-research

A repository-to-be of openly licensed scholarly research articles that can be updated and forked.

envo

A community-driven ontology for the representation of environments

eos

Notes on Encouraging Open Science

Eryops1.github.io

My project webpage online

ethics-resources

null

events

Materials related to events I might attend, and to talks I am giving

factvis

null

FORCE11

Future Research Communication and e-Scholarship

force11-scwg

Force11 Software Citation Working Group

freies_wissen_feedback

Dieses Repo soll für Feedbacks zum Fellowprogramm 'Freies Wissen' genutzt werden.

frictionlessdata.io

Website for Frictionless Data

FutureTDM

Materials of FutureTDM project

getpapers

Get metadata, fulltexts or fulltext URLs of papers matching a search query

git-friendly

Pimp your git workflow. Stop using command-combo-hell and just type pull, branch, merge, push

github-paper

Plos in Computational Biology paper related with github for researchers, code, source and document

gitizendium

An attempt to move a little chunk of Citizendium into Git

global-sprint-2016

repo for planning of Global Sprint 2016, June 2-3

grafana-dashboards

Store for the JSON of the WMDE grafana dashboards

gut-ab

GuttenPlag Abschlussbericht Generator

hello-world

Hello world in every programming language. Thanks to everyone who contributes to this, make sure to see CONTRIBUTING.md for contribution instructions!

ideas

A dumping ground for halfbaked ideas, some of which will hopefully be worked on soon

IMED2016-hackathon

Auxiliary materials for the IMED 2016 hackathon http://www.hackathon.isid.org/

InconsistentXml

null

invenio

Special Zenodo operations branch of Invenio

joss

The Journal of Open Source Software

kune

Kune is a free/open source federated collaborative social network, focused on collaboration rather than just in communication. That is, it focuses on online real-time collaborative editing (based on Apache Wave), decentralized social networking and web publishing, while focusing on workgroups rather than just in individuals. It aims to allow the creation of online spaces of collaborative work, where organizations and individuals can build projects online, coordinate common agendas, set up virtual meetings, publish in the web, and join organizations with similar interests. NOTE: This Github repo is a MIRROR of the real Gitorious repo.

laserpulses

Tests for the paper of Borra & Trottier 2016

learning2code

Documentation of my progress in (re)learning to code

linkypedia

a web based tool to monitor how your website content is used in wikipedia

markdown-toc

Generate a markdown TOC (table of contents) for a README or any markdown files, using remarkable. Used by assemble, verb, and lots of other projects on GitHub. API and CLI.

missingmaps.github.io

Missing Maps Website

mri-scans

I open sourced my brain. Here it is.

MSWissenschaft

A Wikimedia contribution to the traveling science exhibition on board the ship MS Wissenschaft, as per https://en.wikipedia.org/wiki/Wikipedia:GLAM/Ship .

mybiocaddie

test for biocaddie-gym

normdaten-in-wikidata

Clone des Buch-Repository bei Penflip.com

oabiblio

A set of tools for obtaining and analysing information from bibliographic datasets around the prevalence of open access

oabot

Adding links to full text in Wikipedia references

OAButton

Open Access button ? website and bookmarklet

oacwellcome

OA Compliance Checking for Wellcome Trust

openaccess

The Metropolitan Museum of Art's Open Access Initiative

open-access-media-importer

An automated tool for importing media files in Open Access articles into Wikimedia Commons

open-access.net-Fachseite-Biologie

Die fachspezifische Seite für Biologie für open-access.net

openbudgets.github.io

Official openbudgets website

opendataday.org

Open Data Day website

Open-Research-Data-do-a-thon

Activities around research data on Open Data Day 2017

Open-Research-Proposals

A place to draft grant proposals in the open

open-science-museum

Thoughts about an Open Science Museum

openscienceprize

just an archival copy of https://github.com/everpub/openscienceprize

open-science-prize

Auxiliary infrastructure for the Open Science Prize

openscienceprize-1

Just an archival copy of https://github.com/codeforscience/openscienceprize

OpSci

URIs, indexes and RSS feeds of the largest 72 closed-source publishers... and the code to scrape them.

OSCAR

a general [S]earch [A]pplication for [R]df data specially designed for [O]pen [C]itations.

osp

Just an archival copy of https://github.com/InsideDNA/osp

painter-goblin

Painter Goblin Twitter Bot

pepkit.github.io

website

pmc2mediawiki

A PubMed Central to MediaWiki converter

pmidtool

Allow you to create or retrieve a wikidata item that represents a scientific journal article given a pubmed ID

popcorn-docs

Popcorn.js Documentation

popcorn-js

The HTML5 Media Framework

potatoes

Let's Count Some Potatoes!

Probabilistic-Programming-and-Bayesian-Methods-for-Hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

PubMed_databases

Query and examine the database of MeSH terms from PubMed

py2nb

Python script to Jupyter notebook converter

PyPedia_server

The free python programming environment that anyone can edit!

PythonDataScienceHandbook

Jupyter Notebooks for the Python Data Science Handbook

QueryrWebsite

Website that documents the QueryR API

rdmo

A tool to support the planning, implementation, and organization of research data management.

repology

Compare package versions in many repositories

rescience.github.io

ReScience website sources

ReScience-submission

ReScience submission repository

ResourceMiner

Get usage statistics for a list of terms in the scientific literature.

rest-api-doc

Documentation for CrossRef's REST API

richfitz.github.com

null

sandbox

just a place to test or demo features of GitHub, git or version control more generally

schemas

ShEx schemas for common vocabularies and use cases.

Science-on-GitHub

Resources to accompany Nature Toolbox article on Science on GitHub

sciencetogether.github.io

null

ScienceWithPython

Some links and docs related to Josh Bloom's SciPy2012 Keynote (20 July 2012)

scientific-norms

An effort to document scientific norms

scikit-image-paper

null

search-engine

A math-aware search engine, enables the ability to search mathematics online.

Server.Java

A Triple Pattern Fragments server for Java

SE-Static

Mirror of static pages from SE sites.

shuttleworthfoundation.org

Shuttleworthfoundation.org site made with Jekyll

simple-vote

An open-source, live updating, voting platform.

Smallest-Federated-Wiki

This wiki innovates by: 1. federated sharing, 2. drag refactoring and 3. data visualization.

software-discovery-dashboard

null

Stealthcoin

null

studyGroup

Gather together a group to skill-share, co-work, and create community

taxonomy-GBIF-manuscript

Evaluation of GBIF taxonomy

TaxPub

TaxPub Extension of the NLM/NCBI Journal Publishing DTD, v 3.0

the-grid

Source for The Grid website

tools

null

traits

Some experiments around collecting trait-based data

trendingtopics

Rails app for tracking trends in server logs - powered by the Cloudera Hadoop Distribution on EC2

ugrad-handbook

UVa CS Undergraduate Handbook

vocal-learning

Notes on research about the evolution of vocal learning

website

Software Carpentry website

webvirt

NodeJS application to manage hyper-visors though libvirt

whatiscode

Paul Ford?s ?What Is Code??

whyopenresearch

Source files for the Why Open Research? project, an educational site for researchers to learn about open access, open data, open science, and open source.

Wikidata

Thoughts, code snippets and other materials relevant to https://wikidata.org/

wikidata-agent

A single-user server to communicate with the Wikidata API in a simple, minimalist way

wikidataBots

Copy of the wikidataBots repository on BitBucket.

wikidata_fill_openlibrary

Quick script to infer an author's Open Library ID from books in Wikidata

WikidataIntegrator

A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint

wikidata-simplequestions

Mapping of the SimpleQuestions dataset to Wikidata

wikidata-sketchnotes-2016

Sketchnotes made at the wikidata workshop 2016 at verschwoerhaus

WikidataTreeBuilderSPARQL

several scripts for exploration of Wikidata

wikihistoryflow

Visualise Wikipedia page edits using History Flow

Wikimedia-reference-stats

Tools to monitor and improve reference management on Wikimedia projects

Wikipedia-Cite-o-Meter

Measures citations across Wikipedia projects by publisher

wikipulse

a gauge widget to display wikipedia activity

wikistream

displays edit activity on wikipedia

wikiswarm

generate code_swarm data from Wikipedia page histories & user contributions

wiki-tools

Code for my Wikimedia Labs Tools account

workshop-resources

This repository contains material helping you to set up a ContentMine workshop. It also includes tutorials for learning the ContentMine tools on your own.

wrightscape

Infer adaptive landscapes from phylogenetic trees

xkcd-font

The xkcd font

zenodo-accessrequests

Zenodo access requests module.

zibraproject.github.io

Zika Sequencing Consortium

zika

Data repository of publicly available Zika data

Commits To