Nic Herdon

Login: kstatebioinfo

Company: KSU, KINBRE Bioinformatics Core

Location: Manhattan KS

Bio: null

Blog: http://bioinformatics.k-state.edu/

Blog: http://bioinformatics.k-state.edu/

Member of

1. i5K and KINBRE

Repositories

bc

Template for Software Carpentry bootcamp site repository.

BMC-template

null

BNGCompare

Scripts for summarizing Irys Bionano output

Fasta-O-Matic-a-tool-to-sanity-check-and-if-needed-reformat-FASTA-files

null

genome-annotation-and-comparison

null

Irys-scaffolding

scripts to parse IrysView output

learn_git_jms

Example git repo

ngs_scripts_jms

SWC workshop example

path_var

The PATH variable in UNIX. This Repo can be used to learn about the SHELL variable PATH.

read-cleaning-format-conversion

Fastq file tools

scripts

null

stanford_swc

A repo with a simple, moderate and more complex example of scripts to parse FASTA files.

stitch_paper

null

swc

null

transcriptome-and-genome-assembly

Scripts in this repository have been used to assemble de novo transcriptomes and genomes

Commits To