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Stefan van der Walt

Login: stefanv

Company: University of California, Berkeley

Location: Berkeley, CA

Bio: Researcher at the Berkeley Institute for Data Science, open source hacker, explorer.

Blog:

Member of

Repositories

2015_pybootcamp_imgproc: null
2018_aspp_melbourne_cython: null
aandete: Web application to track and share recipes
adventures_in_opencl: A tutorial series for learning OpenCL
aims2014: Math iff computing seminar, 2014
arxiv_tools: Tools to prepare a paper for Arxiv publication
aspp_melbourne_numpy: null
aspp_report: Templated HTML generation for ASPP report
atlas_register: Use scikit-image to register atlas to scan
baselayer: Fully customizable web application template
bilateral: Bilateral Filter
blog: null
bluemix-flask-skimage: Example of how to deploy skimage app on bluemix
bokeh: Interactive Web Plotting for Python
boot-camps: Software Carpentry boot camp material
brainspell: brainspell is a web platform to facilitate the creation of an open, human-curated, classification of the neuroimaging literature
brainx: Tools for analysis of brain imaging-derived networks, based on NetworkX
bytebeats: Bytebeats in Python
cbar_detector: null
cesium: Machine Learning Time-Series Platform
cesium_web: Cesium Web Frontend
cloudpickle: Extended pickling support for Python objects
cython_AY250: Cython course presented at AY250
cython_demo: Basic Cython demo
dask: Parallel computing with task scheduling
dask2py: null
data-pack: Data downloader for Python
datarray: Prototyping numpy arrays with named axes for data management
datascience: A Python library for introductory data science
datatool: Access and download remote datasets
davidc-scipy-2013: Proposal for the dive into numpy tutorial
dependent_build_server: null
diffusion_maps: Illustration of how to use diffusion maps (see also http://inside.mines.edu/~whereman/papers/delaPorte-Herbst-Hereman-vanderWalt-PRASA-2008.pdf)
dipy: Diffusion MR Imaging in Python
docathon: Docathon organization
docker-tree: null
dpt: Python implementation of the Discrete Pulse Transform
d-rug.github.io: Davis R Users' Group website
ds_intro: Introduction to Data Science with Python
DTW: Dynamic Time Warping
elegant-scipy: Draft of the book Elegant SciPy for O'Reilly
emacs-python-environment: Python virtualenv API for Emacs Lisp
evenflow: Compute transfer entropy and related statistics
fpsync: Synchronize files over multiple systems.
francois_pkg_demo: null
gcalcli: Google Calendar Command Line Interface
gcsannex: git-annex external special remote for Google Cloud Storage
github_training: Test repository for GitHub training
git_NEP: NumPy Git Transition Proposal
git_training: Temporary repository for git training
git-tutorial: Notes for a workshop on using git and github
googledriveannex: null
grave: Grave?dead simple graph visualization
growcut: Python implementation of the growcut algorithm.
growcut_py: Python implementation of GrowCut segmentation
heroku-buildpack-znc: null
i3tree: Human-friendly display of i3's tree layout
imagexd_scientific_python: ImageXD 2018 Scientific Python & Image Processing tutorial
inselect: Insect selector
ipython: Official repository for IPython itself. Other repos in the IPython organization contain things like the website, python3 support, etc.
jupytercontrib: null
lizecillie_progress_reports: null
lmwang_cython: null
lulu: Fast implementation of the Discrete Pulse Transform (LULU-operators) in 2D
lxd: Daemon based on liblxc offering a REST API to manage containers
lyx_stellenbosch: LyX templates for usthesis (Stellenbosch)
mahotas: Computer Vision in Python
manylinux: Python wheels that work on any linux (almost)
manylinux-builds: null
matplotlib: null
mc2013: filtered Pn project with Simon
memory_profiler: Monitor Memory usage of Python code
mentat.za.net: null
MLTP: ML Timeseries Platform
multibuild: Machinery for building and testing Python Wheels for Linux, OSX and (less flexibly) Windows.
music-features: null
nature-demo: Materials for the November 2014 Nature Article
nbconvert: IPython notebook converter
nbopen: Open an IPython notebook in the best available server
ned_imagepairs: null
nibabel: Python package to access a cacophony of neuro-imaging file formats
np_inside: NumPy internals slides
numpy: Numpy main repository
numpydoc: Numpy's Sphinx extensions
numpy-grant-planning: Scratch space for planning the NumPy grant at UC BIDS
numpy.org: The Numpy home page
nvpy: Simplenote syncing note-taking application, inspired by Notational Velocity and ResophNotes, but uglier and cross-platformerer.
oss_devkit: Home for open source development toolkit (cmd line tool, bot, and analytics dashboard)
outlier-utils: null
pandas: Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
pelican: Static site generator that supports Markdown and reST syntax. Powered by Python.
permute: permutation tests and confidence sets
pna2015: null
pomo: Python pomodoro tracker
procbuild: SciPy proceedings builder
projector: Virtual screen projector
push_dir_to_repo: Push a directory to a remote Git repository (used to upload GitHub pages, e.g.)
pycam02ucs: Compute perceptual similarity between colors according to the CAM02-UCS formula given by Luo et al (2006)
pydata2012: Materials related to the PyData workshop / PyCon 2012 tutorials
pydata-cookbook: PyData Cookbook Project
pymdv: Python code for reading in MDV radar files
pymir: Music IR Library for Python
PyOpenCL: Copy of Andreas Kl�ckner's PyOpenCL
python-benchmarks: A set of benchmark problems and implementations for Python
python-register: Linear and non-linear image registration methods, using scipy and numpy.
python-seminar: Python Seminar Course at UC Berkeley (AY 250)
python-testing: Introduction to testing based on Scopatz and Huff's "Effective Computation in Physics"
pythonvision_org: django-gitcms files for http://pythonvision.org
pyzmq: Py0MQ: Python bindings for zeromq
quadtree: Image quad trees
randkit: Small stand-alone mtrand wrapper example
re2: RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.
register_gui: Temporary home for registration GUI
rv_seminaar: LitNet Rekenaarvisie-miniseminaar
scale-color-perceptual: Javascript exports of matplotlib's new default color scales; magma, inferno, plasma and viridis. Works with browserify and D3.js
scikit-image: Image Processing SciKit (Toolbox for SciPy)
scikit-image-paper: null
scikit-image-web: scikits.image web page sources
scikit-learn: scikit-learn: machine learning in Python
scikits.cuda: CUDA SciKit
scikits.gpu: Graphical Processing Unit algorithms for scientific computing
scikits.image: Image Processing SciKit (Toolbox for SciPy)
scikits_image_logo: Code to generate a logo for scikits.image
scipy: Scipy main repository
scipy2013_talks: Content presented at the 2013 SciPy conference
scipy3: null
scipy-articles: Publications about Scipy
SciPyCentral: SciPy Central
scipy-conference: Scipy2013 conference materials
scipy-lecture-notes: Notes used to give tutorials (for example at Euroscipy 2010)
scipy.org: Scipy.org web site source code
scipy_paper: Author toolkit for SciPy conference
scipy_proceedings: Tools used to generate the SciPy conference proceedings
selective-inference: Software for selective inference
skimage-branding: null
skimage_circles: null
skimage-org: Organizational documents
skimage-tomo-paper: null
skimage-tutorials: Scikit-image tutorials
skyportal: ZTF Marshal
social-storage-peewee: Python Social Auth - Storage - Peewee
spheredwi: Research: representation of functions on the sphere and diffusion-weighted imaging
spint: Image interpolation using sparse matrix operators
SR_SSID: null
stat-159-numpy: null
stefanv.github.io: mentat.za.net
step-gcs-website-deploy: Wercker Deploy to Google Cloud Storage as Website
streamline_distance: Computation of streamline distances and comparison of speed with different implementations.
structlog: Structured Logging for Python
summerschool: Proposal for a summer school in reproducible research in Python, Summer 2012
supreme: SUper REsolution MEthods
swc-site: Software Carpentry web site.
sympy: A computer algebra system written in pure Python
tagspaces: Developers resources for TagSpaces
teaching: Lecture materials
test-data: Test Data for datapack
test-doc-upload-tool: null
text-thresher-backend: A tool for decomposing and annotating articles using the crowd. Under development for the Deciding Force Project (http://www.decidingforce.org/)
toolz: A functional standard library for Python.
toydist: A toy distribution tool for python
tracshell-fixes: null
umfpack: scikits.umfpack improvements
vapory: Photo-realistic 3D rendering with Python and POV-Ray
vibrations: Mechanical Vibrations
viscm: A tool for visualizing and designing colormaps using colorspacious and matplotlib
watchtower: null
zero_to_docs: Materials to help you go from zero to full documentation as quickly as possible.

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This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.