Chris Hamm

Login: butterflyology

Company: Monsanto Company

Location: Davis, CA

Bio: Beer fan with a science problem

Blog: butterflyology.github.io

Blog: butterflyology.github.io

Repositories

2016-03-07-notre-dame

null

2016-03-21-UConn

Website for SWC workshop at UConn 21-22 March 2016

2016-10-27-Purdue

Website for SWC workshop at Purdue University, 27-28 October 2016

2016-aug-nonmodel-rnaseq

null

2017-02-14-kcfrb

Website for Software Carpentry workshop Federal Reserve Bank of Kansas City (13-14 February 2017)

2017-03-22-csumb

Website for 2017 CSUMB Data Carpentry genomics workshop

2017-06-15-FRB

Repo for 2017-06-15-FRB

2017-08-14-UCB-ttt

Website for Software Carpentry Instructor Training at UC Berkeley

2017-10-16-Monsanto-ttt

Train the Trainers for Monsanto Company

2017-12-05-rutgers

Rutgers University Cloud Genomics Workshop

2017-12-18-grand-valley

Repo for GVSU Data Carpentry workshop

2018-01-08-TPBI

null

2018-06-04-Monsanto-R

Workshop website

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

angus2017-lecture-3

Repo for 2017 DIBSI talk

baseball_R

Companion to Analyzing Baseball Data with R

Baseball_salaries

Repo for googleVis doc on MLB team salaries over time

base_R_plots

Repo for short course on plotting with base `R`

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

binormal_Gibbs

Latex and R code for a bivariate normal Gibbs sampler

blog

Pizza, beer and science.

board

Holds public material generated by and for the SCF board.

butterflyology.github.io

Personal webpage for Chris Hamm

closetMaidCalculator

Repo for shiny App to calculate cost of adding a ClosetMaid system

crawl

A repo in which I learn blogdown and list awesome places to eat and drink in and around East Lansing, Michigan

dammit

just annotate it, dammit!

dc_2016_04

Data Carpentry materials for Jackson Labs workshop

DDP_HW3

Homework for Developing Data Products week 3

DDP_HW4

Repository for Homework 4

DI16-NEON-participants

A repository for all participant code & documents during the 2016 NEON Data Institute

dib-lab

Issue tracker and Web site for the Lab for Data Intensive Biology at UC Davis.

dibsi

Data Intensive Biology Summer Institute

Euptychia_ovi

Code for Euptychia oviposition preference experiments

geomorph

Geomorph is a software package for performing all stages of geometric morphometric shape analysis of landmark points and curves in 2-and-3-dimensions as well as 3D surfaces in the R statistical computing environment. This repository is dedicated to providing beta versions between CRAN uploads

git-collaboration

A repository to demonstrate collaboration workflows

git-desktop

Modified version of the Software Carpentry git-novice lesson that uses GitHub Desktop

Hamadryas

Code for Hamadryas geomorph project

Hamm_2012_JTE

Code and data from Hamm 2012 in the Journal of Tropical Ecology

Hamm_2013_ICD

Code and data from Hamm 2013 Insect Conservation and Diversity

Hamm_et_al_2014

Code and data from Hamm et al. 2014 (Molecular Ecology)

Hamm_Fordyce_2015

Code and data for Hamm and Fordyce 2015 (Evolution)

hBm

Development code for hierarchical Bayesian models for the estimation of demographic parameters using sparse data

hyperspec-beta

Hyperspectral beta diversity vs. in situ beta diversity: same same or different?

instructor-training

Software Carpentry instructor training course

instructor-training-reorg

null

introduction-RR-Jupyter

Introduction materials for Reproducible Research Curriculum with Jupyter notebook

Mohonk_report

Repository for the 2016 Mohonk Butterfly Biodiversity Survey

Monarch_haplotype

Repo for Hamm 2017 paper on Monarch butterfly haplotype and chromosomal evolution

MSB-Bayes

Repo for hierarchical Bayesian models on Neonympha mitchellii

MSU-SWC

Repo for MSU Software Carpentry R lesson

N50

R code I find useful to help with genomics, such as calculate N50 from a fasta file

National_Parks

A map of National Parks I have visited

neon-aop-package

An R package to facilitate working with NEON hyperspectral remote sensing data in R

NEON-R-Spatio-Temporal-Data-and-Management-Intro

NEON/Data Carpentry lessons in development for Intro to Spatio-temporal Data and Data Management Best Practices NOTE: this repo is still under active development and isn't published on the neondataskills.org site yet.

Neonympha_geomorph

Repo for data and code for *Neonympha mitchellii* geometric morphometrics project

Neophasia

Code and data for Bell et al. Neophasia morphometrics project

NGS-DE

Code from Meeta Mistri's tutorial from NGS2015

NGS_Reproducibility

Data and Code for NGS2015 week three tutorial

OH-response

Code and data from our response to a comment about Hamm and Fordyce 2015

ordiBreadth

Package repo for R package ordiBreadth

organization-reproduceR-lesson

Materials for the topic 'organization' in the Reproducible Research Curriculum

PCM-intro

Code and data for lectures on Phylogenetic Comparative Methods

planets

Bodega Training repo

quant_genR_tucson

Repo for quantitative gen for Tucson Plant Breeding Institute

ReproduceR

GH-pages site

resume

My resume and full CV

rethinking

Statistical Rethinking course and book package

rr-automation

Resources for automation tutorials

rr-intro

Introduction materials for Reproducible Research Curriculum

rr-literate-programming

Repository for lesson materials on Literate Programming

rr-organization1

The Organization lesson for the Reproducible Science Curriculum

rr-publication

Reproducible Science Curriculum Lesson for Publication

rr-version-control

Reproducible Science Curriculum Lesson for Version Control

rr-workshop

Workshop and lesson templates

Selaginella

Code and data from Euptychia westwoodi and *Selaginella* project

SLDC

Code and data for NGS2015

spaceMovie

A color palette for a movie set in space

Spreadsheet_slides

Repo for Data Carpentry Spreadsheet lesson in the form of slides.

sql-novice-survey

Software Carpentry introduction to SQL for novices.

Star_Wars_musical_ecology

Community ecology tools applied to the music of the Star Wars films.

SWD_genome

Data and code from my contributions to Chui et al. 2013 (Drosophila suzukii genome paper)

tidy_Baseball_Data

Repository for "tidy" version of the code and figures from Analyzing Baseball Data with R (Marchi and Albert 2014)

tidy_test

Repo for tidy_data 3 hr workshop

Tuesday_pm

Repo for neonDI2016

tutorial-blast-annotation

null

updateR

Short script to update R between major releases

website

Software Carpentry website

Wed-Project

Repo for the neonDI2016 Wednesday evening class project

Wol_rates

Repo for Marion and Hamm (2016)

wrangling-genomics

Lesson for wrangling genomics data

Commits To