Philipp Bayer

Login: philippbayer

Company: University of Western Australia

Location: Perth, Quokka-country

Bio: Bioinformatics postdoc at UWA, Perth in the @appliedbioinformatics group

Blog: philipp-bayer.net

Blog: philipp-bayer.net

Member of

1. openSNP
2. null

Repositories

2014-07-30-pyconaus

Software Carpentry bootcamp 2014 for PyCon Australia - at Universty of Queensland

2016-10-25-uwa

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2017-01-30-Perth-ResBaz

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bc

Template for Software Carpentry bootcamp site repository.

Bioinformatics-tools

Small repo with tiny scripts used in bioinformatics

B_oleracea_R_genes_supplementary

This repository contains scripts used to generate the plots and results of the B. oleracea R-genes paper

contigPlacer

A simple program to place unplaced contigs based on (Skim)GBS data.

CV

My curriculum vitae.

dotfiles

Just a couple of dotfiles so I can git clone from work, take elements as needed :)

EcologyMaps

Trying to map european open data to the map of europe using Rails

flatland-plots

Plotting the two-dimensional beings of Abbott's Flatland (1884).

FreakquenzyRecords

This is a reboot of the old frqtest, using a bit more rails-magic

ggp-base

The General Game Playing Base Package

Goodreads_to_Tumblr

A script that parses your exported Goodreads reviews and uploads them to Tumblr's posting queue

Goodreads_visualization

A Jupyter notebook where I play with my Goodreads data

homebrew-science

:beer::microscope: Scientific formulae for the Homebrew package manager

Kaggle_Titanic_TPOT

Trying to get better scores in Titanic by using TPOT

Labflags_analysis

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machine_learning_notebooks

This is where I store Jupyter notebooks for machine learning/PMLG/Kaggle

matplotlib_tricks

Just a few matplotlib tricks because I keep on googling them

mendeley

A simple ruby wrapper for the mendeley api

opensnp28c3

The slides for our presentation of openSNP/personal genomics at the 28c3

opensnp.org-docker

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opensnp_paper

Writing up awesome stuff about openSNP

orthomclToVenn

Creates Venn diagrams for OrthoMCL output

PASW-SPSS-parser

Just a small parser for the tab-delimited output of PASW

picard

A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.

plt

A path to Programming Language Theory enlightenment

postdoc-funding-schemes

Funding schemes and opportunities for postdoc fellowships

QTLNetMiner

QTLNetMiner is a platform for fast and systematic candidate gene discovery using data mining and network visualisation techniques

resbaz-2016-02-01

https://feb2016.resbaz.com/

snpr

The sources of the openSNP website

turbo-shame

Once upon a time, there was a bioinformatics summer project which involved the translation of HIV and SIV nucleotide sequences. It was for @gedankenstuecke and me the first time we coded for longer than 5 lines. This is it. Warning: It's terrible.

zeroclickinfo-spice

DuckDuckGo instant answer plugins based on JavaScript APIs

Commits To