Maximilian Haeussler

Login: maximilianh

Company: UCSC

Location: Paris, France / Santa Cruz, CA

Bio: MS CompSci/Business, PhD Biology, now Research Scientist at UCSC Genome Browser

Blog: http://hgwdev.soe.ucsc.edu/~max

Blog: http://hgwdev.soe.ucsc.edu/~max

Repositories

acgi

Code for ACGI Ethereum demo

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

brca-exchange

Overall management and deployment of the BRCA Exchange web portal and pipeline scripts

browserDocker

UCSC Genome Browser Docker

browserInstall

An install script for the UCSC Genome Browser

cellBrowser

Python pipeline and Javascript scatter plot library for single-cell datasets

cpython

Semi-official read-only mirror of the CPython Mercurial repository

crisporPaper

Code for the CRISPOR article, all data and code to create figures and analysis

crisporWebsite

All source code of the crispor.org website

crisprAnalysis

code and data to analyze crispr offtargets

crisprOtAnalysis

analysis of cirspr/cas9 offtargets

dwg-website

GA4GH Data Working Group website hosted at ga4gh.org

easy-data

easy access to benchmark datasets

kent

UCSC Genome Browser main kent repository

knowledger

A DCC-like system to submit data and metadata and keep track of submissions

maxtools

Various command line tools, mostly for bioinformatics, for .tab,.bed,.maf plus various parsers

ptmFinder

trying to find PTM sites in fulltext papers

pubMunch

various tools to download, convert and process the full text of scientific articles

pubMunch3

various tools to download, convert and process the full text of scientific articles

repeatBrowser

scripts to create the repeat browser assembly hub

schemas

Work on data models and APIs for Genomic data.

scihub.py

:page_facing_up: Unofficial Python API and command-line tool for sci-hub.io

ucscBeacon

A GA4GH Draft Beacon implementation

Commits To