Nate Coraor

Login: natefoo

Company: @galaxyproject

Location: State College, PA

Bio: System Administrator, Programmer, Whatever else

Blog:

Blog:

Member of

1. Galaxy Project
2. Intergalactic Utilities Commission
3. Python Packaging Authority

Repositories

ansible

Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy. Avoid writing scripts or custom code to deploy and update your applications? automate in a language that approaches plain English, using SSH, with no agents to install on remote systems.

ansible-galaxy

An Ansible role for managing a Galaxy (http://galaxyproject.org) server.

ansible-galaxy-extras

Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.

ansible-modules-core

Ansible modules - these modules ship with ansible

ansible-modules-extras

Ansible extra modules - these modules ship with ansible

ansible-postgresql-objects

A simple Ansible role for managing PostgreSQL objects (users, groups, databases, and privileges).

ansible-tools

An Ansible role for automated installation of tools from a Tool Shed into Galaxy.

bedtools-galaxy

null

bioblend

A Python library for interacting with CloudMan and Galaxy API

bioconda-recipes

Conda recipes for the bioconda channel.

bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

cargo-port

cache packages permanently

conda

OS-agnostic, system-level binary package manager and ecosystem

conda-iuc

Conda recipes maintained by the Galaxy IUC.

dagobah-training

Training ground for aspiring Galaxy skywalkers

docker-ipython-notebook

:whale: :microscope: :books: IPython running in a docker container. This image can be used to integrate IPython into Galaxy

dotfiles

My dotfiles, hopefully I don't commit anything dumb.

drmaa_utils

PSNC drmaa_utils

drmaa-utils

FedStage DRMAA Utils imported from PSNC SVN

galaxy

Galaxy

galaxy-beta1

High powered genomics for everyone

galaxy-beta2

We're live:

galaxy-hub

Galaxy project website, aka Galaxy Community Hub

galaxy-lib

Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.

galaxyproject.github.io

Informational repository, highlighting the code offerings of Galaxyproject

galaxy-tools-devtest

Galaxy tools useful for performing development and admin tasks typically related to job control or Galaxy server administration

gravity

Galaxy process management and system administration tools

gxgit2hg

Push Galaxy Github commits to Bitbucket

lionshead

Advanced platform detection for Python

manylinux

Python wheels that work on any linux (almost)

misc-scripts

Miscellaneous scripts that I normally throw away

nate.coraor.org

Source for my personal site

nginx-upload-module

A module for nginx web server for handling file uploads using multipart/form-data encoding (RFC 1867).

openafs

Fork of OpenAFS for illumos support (servers/userspace only). Quick hacks not intended to be mergeable upstream. Based on http://gerrit.openafs.org/#change,10464 and http://gerrit.openafs.org/#change,11132

osimag.es

A collection of iPXE scripts that powers boot.osimag.es. It's a fast way to bring up a menu and netboot any of your favorite operating systems.

p4

Proper Prior PR Planning

pip

The PyPA recommended tool for installing Python packages

planemo

Command-line utilities to assist in developing tools for the Galaxy Project.

predef

Overview of pre-defined compiler macros for standards, compilers, operating systems, and hardware architectures

proftpd

ProFTPD source code

pulsar

Distributed job execution application built for Galaxy

pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

slurm

Slurm: A Highly Scalable Resource Manager

slurm-drmaa

DRMAA for Slurm imported from PSNC SVN

slurm-drmaa-old

Old working repository for my slurm-drmaa fork, the new one can be found at:

slurpwiki

Export/clone/checkout SourceForge wikis to git with revision and author attribution history

smf-nettune

Tune ndd/ipadm properties on illumos/Solaris at boot via SMF

smf-smartos

SMF stuff for SmartOS

sphinxconfig-simpleversioning

Simplified version linking for Sphinx documentation

starforge

Build Galaxy dependencies and rebuild dpkgs in Docker

syncforks

Sync your GitHub forks' branches with upstream

tools-devteam

Repository encapsulating a set of Galaxy tools mostly written by the Galaxy Team.

tools-iuc

Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission

Unicycler

hybrid assembly pipeline for bacterial genomes

uwsgi

uWSGI application server container

uwsgi-docs

Official uWSGI docs, examples, tutorials, tips and tricks

vadebuildsible

Rebuild Ubuntu/Debian source packages with Vagrant and Ansible

Commits To