Nitesh Turaga

Login: nturaga

Company: @Bioconductor

Location: null

Bio: Software Engineering, Data science, Computational Biology.

Blog: http://nturaga.github.io/

Blog: http://nturaga.github.io/

Repositories

ansible-cloudlaunch

An Ansible playbook for installing Galaxy Cloud Launch.

ansible-cloudman-galaxy-setup

This role is used to setup Galaxy for use with CloudMan.

ansible-cloudman-image

An Ansible role for building a machine image for CloudMan.

ansible-galaxy-tools

An Ansible role for automated installation of tools from a Tool Shed into Galaxy.

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

awesome-R

A curated list of awesome R packages, frameworks and software.

aws.ec2

AWS EC2 Client Package

bioblend-tutorial

null

bioc_cloudman

Bioblend/cloudman modifications for Bioconductor

bioc-galaxy-integration

Writing Galaxy tool wrappers for R and Bioconductor packages

bioc-galaxy-jupyter-notebook

This is the paper for f1000 due on the 13th October for publishing on the 20th

BiocGenerics

test

BiocInstaller

null

BiocIntro

Course material for introductory R / Bioconductor courses

biocloudcentral

Easily launch CloudMan and CloudBioLinux clusters with no manual configuration

bioc_manifest

null

bioc_manifest_3.3

null

bioc_manifest_3.4

null

bioconda-recipes

Conda recipes for the bioconda channel.

BiocParallel

Bioconductor facilities for parallel evaluation

BloomFilter

BloomFilters To Filter Reads during alignment

BLR

null

cargo-port

cache packages permanently

circos_plot_test

Testing ways to make circos plots

CLIPseqPrep

Preprocessing CLIP-seq datasets

cloudbridge

A simple cross-cloud Python library

cloudman

null

Contributions

Contribute Packages to Bioconductor

datasciencecoursera

Data Science coursera class work

datasharing

The Leek group guide to data sharing

DESeq2_test

tests for DESeq2(or any bioc-package) on the git server.

docker-galaxy-stable

:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.

docker-images

Repository of Docker images created by Continuum Analytics

docker-recipes

Docker stuff for galaxy

docker-rstudio-notebook

RStudio running in a docker container. This image can be used to integrate RStudio into Galaxy

ELMER

Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within distal enhancers, and link these enhancers to downstream target genes

ephemeris

Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.

galaxy

Data intensive biology for everyone.

galaxy-cloudman-playbook

Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server

galaxy-prodction-config

Galaxy production env config file

galaxyproject.github.io

Informational repository, highlighting the code offerings of Galaxyproject

galaxy-rna-workbench

Galaxy RNA workbench (de.NBI project)

galaxy-tool-popularity

null

galaxy-tools-playbook

A ready-to-use Ansible playbook for the Galaxy Tools role

GeneExpressionDataAnalysis

JHU Computational Genomics Workshop- GeneExpressionAnalysis

ggpy

ggplot port for python

gitolite-lfs

git-lfs implementation for Gitolite.

homebrew-science

Scientific formulae for the Homebrew package manager

HomeMirror

Android application powering the mirror in my house

mac-dev-playbook

Basic web and app developer Mac setup in Ansible playbooks.

maintain_bioc_package

Maintaining your bioconductor package

minfi

Devel repository for minfi

ml-in-action

Just python and machine learning

packaga_elmer_1.00.0

ELMER tool for galaxy

package_kraken_0_10_3-beta

Kraken tool for Galaxy

package_minfi_1.15.7

Minfi for galaxy

PathwayAnalysis

null

PeaksAnalysis

DNA Methylation Peaks analysis from DEVA ACME algorithm

planemo

Command-line utilities to assist in developing tools for the Galaxy Project.

poretools-galaxy

Poretool wrapper for Galaxy

pre-commit-hooks

Some out-of-the-box hooks for pre-commit

Probabilistic-Programming-and-Bayesian-Methods-for-Hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

Projects

CMU Projects

PySvn

Lightweight Subversion library for Python.

Random-Assign

null

RNAseq_workflow

TCGA_RNA seq workflow

rocker

R configurations for Docker

RoogleVision

R Package for Image Recognition using Google Cloud Vision

soccer-cli

:soccer: Football scores for hackers. :computer: A command line interface for all the football scores.

spbtest3

Test package for the Single Package Builder

starforge

Build Galaxy dependencies, wheels, and other things, in Docker (and other things)

study

to keep my study materials

TCGA_RNAseq

null

test_mammaprint

null

test-rstudio-build

Taken from Eric Rasche's

tools-devteam

Contains a set of Galaxy Tools mostly written by the Galaxy Team.

tools-iuc

Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission

workflows

Bioconductor workflows which need to be R packages

Commits To