Christian Brueffer

Login: cbrueffer

Company: Lund University Cancer Center

Location: Lund, Sweden

Bio: Cancer Genomics PhD student at @translational-oncogenomics (http://www.med.lu.se/saalgroup).

Blog: http://www.brueffer.io

Blog: http://www.brueffer.io

Member of

1. Biopython Project
2. conda-forge
3. The FreeBSD Project
4. null

Repositories

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bioconda-utils

Utilities for building and managing bioconda recipes

biopython

Fork of the official biopython repository.

biopython.github.io

Source of biopython.org website, migrated from MediaWiki

bowtie

An ultrafast memory-efficient short read aligner

bowtie2

A fast and sensitive gapped read aligner

breakdancer

SV detection from paired end reads mapping

cbrueffer.github.io

null

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

course

Slides, figures, and other material for teaching using tracing and observability on FreeBSD

cufflinks

null

gemini

a lightweight db framework for disease and population genetics.

GenVisR

Genome data visualizations

hera

null

hisat2

Graph-based alignment (Hierarchical Graph FM index)

joss

The Journal of Open Source Software

libxo

The libxo library allows an application to generate text, XML, JSON, and HTML output using a common set of function calls. The application decides at run time which output style should be produced.

matplotlib

matplotlib: plotting with Python

misc_bioinf

Repository for miscellaneous bioinformatics scripts that may be useful to others.

numpy

Fork of the Numpy main repository

openbsm

OpenBSM open audit implementation

pamr

pamr ? Pam: prediction analysis for microarrays

pep8-git-hook

Git pre-commit hook that checks for Python PEP8 style compliance.

pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

r-digest-feedstock

A conda-smithy repository for r-digest.

r-dplyr-feedstock

A conda-smithy repository for r-dplyr.

r-fdrtool-feedstock

A conda-smithy repository for r-fdrtool.

r-gridextra-feedstock

A conda-smithy repository for r-gridextra.

r-igraph-feedstock

A conda-smithy repository for r-igraph.

r-mixomics-feedstock

A conda-smithy repository for r-mixomics.

r-rcurl-feedstock

A conda-smithy repository for r-rcurl.

r-rgl-feedstock

A conda-smithy repository for r-rgl.

r-rsconnect-feedstock

A conda-smithy repository for r-rsconnect.

rstudio

RStudio is an integrated development environment (IDE) for R

samtools

This is the official development repository for samtools.

scipy

Fork of the Scipy main repository

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

talks

Biopython talks given at the Bioinformatics Open Source Conference (BOSC)

tophat

Spliced read mapper for RNA-Seq

tophat-recondition

Post-processor for TopHat unmapped.bam files making them useable by downstream software.

trustedbsd-www

TrustedBSD website converted from FreeBSD Perforce

UMI-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

vagrant-galaxy

Vagrant launcher for Galaxy

VarDict

VarDict

VarDictJava

VarDict Java port

Commits To