Jerome Kelleher

Login: jeromekelleher

Company: Big Data Institute

Location: null

Bio: null

Blog:

Blog:

Member of

  1. conda-forge
  2. McVean Lab
  3. null
  4. null
  5. null

Repositories

ancestral-waves
Simulations of ancestral waves for the continuum, Wright-Fisher and Moran models.
bioconda-recipes
Conda recipes for the bioconda channel.
compliance
A compliance test suite for the APIs defined in the schemas repository.
discsim
Efficient coalescent simulations in a spatial continuum
ercs
Coalescent simulations in continuous space
ftprime_ms
null
fwdpy11_arg_example
Example of tracking the ARG during forward simulations. Implementation is a Python package using fwdpp, fwdpy11, msprime, and pybind11.
ga4gh-client-c
Experimental C client library for the GA4GH API.
gqt
A genotype query interface.
gramtools
Genome inference from a population reference graph
gsl-feedstock
A conda-smithy repository for gsl.
gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
htpc
Code used for running my HTPC
htsget
Python client for GA4GH htsget protocol
htsget-tester
A tester for the htsget API.
hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
jekyll-now
Build a Jekyll blog in minutes, without touching the command line.
kastore
The key-array store for read-only numerical data.
kingman
An example Python package, which simulates Kingman's coalescent.
mccortex
Cortex on steroids: for larger populations with better assembly
msprime
A reimplementation of Hudson's classical ms simulator for modern data sets.
msprime
A reimplementation of Hudson's classical ms simulator for modern data sets.
msprime-feedstock
A conda-smithy repository for msprime.
msprime-paper
Comparisons of simulators for the msprime paper
numcodecs
A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
protobuf
Protocol Buffers - Google's data interchange format
pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
python-c-api-demo
A demo of the Python C API for CodeMonkeys
schemas
Work on data models and APIs for Genomic data.
scripts
EMR training repo
scrm
An accurate coalescent simulator for genome-scale sequences
server
A reference implementation of the APIs defined in the schemas repository.
spg-chapter
Chapter for Statistical Population Genetics
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
ts_indexing_experiments
Experimenting with methods to index tree sequences.
tsinfer
Infer a tree sequence from genetic variation data
tutorials
A set of tutorials for msprime and tskit.
vcf2avro
Experimental tool to convert Variant Call Format files to Apache Avro
website
Personal website
zarr
An implementation of chunked, compressed, N-dimensional arrays for Python.

Commits To

RepositoryMost Recent Commit# Commits
jeromekelleher/ga4gh-client-c2015-04-24 15:23:04.03

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.