Larsson Omberg

Login: larssono

Company: null

Location: Seattle, WA

Bio: null

Blog:

Blog:

Member of

1. Sage Bionetworks

Repositories

Analysis_helpers

Pieces of reusable code for data analysis

bridgeclient

null

cmc

visualisation portal for common mind data. No data is stored in github.

folium

Python Data. Leaflet.js Maps.

GEO-Analysis

Take sra files downloaded from GEO and convert them to differential expression files

GEO-Metadata-Translator

Converts a GEO metadata file into a hierarchical structure of dictionaries (Python)

githubr

Making it easy to talk to GitHub from R

KRAS_Analysis

KRAS NSCLC work essentially

mPower-sdata

scripts used for preparation of Nature Scientific Data submission and release of mPower data

open-source-ios-apps

:iphone: Collaborative List of Open-Source iOS Apps

pcbc_c4_analysis

Analysis of C4 data

public-workflows

A place to collaborate on public SeqWare workflows

Sage-Analysis-Pipeline

null

sepsis-resilience

This project is done by Jing Tong (Computational Biology Ph.D. student at University of Texas Southwestern Medical Center) during Insight health data science progrom in July 2015. Collaberated with Sage Bionetworks to find the important factors for sepsis resilience.

supportmix

A admixture deconvolution method

synapseDaemons

null

SynapseDemo

Toy demos

synapseDocs

null

synapseGraphDB-neo4j

null

synapseICGCSampleTracker

Sample tracking for ICGC/TCGA

synapsePythonClient

python client for the Synapse. Please visit https://synapse.sagebase.org/ for more information.

synapseTutorials

Small Vignettes of Synapse use

SynapseWebClient

The web client of the Synapse REST service core

TCGASurvivalModeling

null

vcf2maf

Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)

vcf-uploader

This tool is intended to be a generic upload script to be used to upload VCF's into GNOS

Commits To