John T. Prince

Login: jtprince

Company: Doba Inc.

Location: Orem, Utah

Bio: null

Blog:

Blog:

Member of

1. Brigham Young University Computational Mass Spectrometry Group
2. princelab
3. SciRuby

Repositories

arrayclass

A class factory for generating Array based objects whose attributes can be accessed like those of a normal ruby object (or like an array). They are highly memory efficient (almost equivalent to an Array) and fast to work with.

binneroc

Bins things in constant time, O(c) or O(1).

bioinformatics

Tools for bioinformatics

bivy

"bibliography in vim and yaml" is a lightweight bibliographic management system. Create bibliographies and citations with simple tools.

django-measurement

Easily store, retrieve, and convert measurements of weight, volume, distance, area and more.

dna_sequence_aligner

Gives a very nice and informative alignment of partially overlapping DNA sequencing reads using bioruby and clustalw.

dotfiles

environment config files

dotmation

manages and links dotfiles and environment files and is github aware

EQBuddy

Home and visiting teaching organizer

histogram

Makes histograms from data. Features: auto-bin (Scott, Sturges, FD, etc), multiple datasets, and weights.

home_teach

reads the output of an LDS home/visiting teaching assignments pdf

hydrogen_bondifier

Hydrogen bondifier calculates hydrogen bond inter-molecular distances and distance to surface from PDB files using pymol and BioRuby

hyp-trine3

Not exactly like trine3. We are building this game for fun.

iclicker-session

Some simple add-ons for the OS independent iclicker software by siefkenj

id3-rename

Rename id3 tags

learning_suite

tools for dealing with BYU's learning suite software and gradebook (integrating with iclicker, etc.)

molecules

A library of molecules for scientific calculations in Ruby.

MSabundanceSIM

A simulator for creating case and control "samples" (molecule and abundance lists) in simple or .fasta format with reasonable variance from one or more real world examples.

ms-core

shared core library for mspire

ms-error_rate

an mspire library for calculating error rates (false discovery rates) in mass spec proteomics

ms-fasta

mspire library for working with fasta and related files

ms-in_silico

mspire library supporting in-silico calculations for mass spec data (protein digestion, peptide fragmentation, etc.)

ms-mascot

mspire library for working with mascot files

ms-msrun

An mspire library for working with LC/MS runs

ms-template

An mspire library that is merely a template for other mspire libraries

ms-xcalibur

mspire library for working with xcalbur generated data (.RAW files)

mwe-biblatex-biber

a minimum working example of using biblatex and biber from http://tex.stackexchange.com/questions/21486/error-message-when-using-biber

numrb

Numeric arrays modeled after numpy and narray that are easily modifiable using FFI-Inliner.

optrite

Unoriginal option parsing in the spirit of trollop, micro-optparse, commander, and optitron.

rserve-simpler

Adds a simple interface on top of rserve-client

ruby_gnuplot

The ruby gnuplot gem [gnuplot] [rgnuplot] (official releases of the gnuplot gem are from rdp branch)

ruby_gtk3_tutorial

A tutorial for using Gtk3 from ruby

ruby-units

A unit handling library for ruby

runarray

pure ruby implementation of NArray

simpler

simpler ("Simple R") is a lightweight wrapper of R (really Rscript) inspired by the gnuplot and rsruby gems.

spec-more

very terse syntax for testing/specing ala Test::More

terrapin

yet another mass spec viewer. uses rubygame and FFI-OpenGL for simple scripting and FFI-Inliner for blazing fast speed. Meant to run mzML and mzIdentML.

validators

Python Data Validation for Humans?.

vita_maker

using a validated YAML file, creates your vita

wmiirc

Ruby configuration for wmii window manager

Commits To