Daniel C. Jones

Login: dcjones

Company: University of Washington

Location: Seattle, WA, USA

Bio: null

Blog: http://homes.cs.washington.edu/~dcjones/

Blog: http://homes.cs.washington.edu/~dcjones/

Member of

1. BioJulia
2. The Julia Language

Repositories

Bio.jl

Bioinformatics and Computational Biology Infrastructure for Julia

cbgb

computational biology grab-bag: messy one-off scripts for a variety of tasks

Codecs.jl

Common data encoding algorithms

color.jl

Pretty colors for Julia

colormake

colorize GNU make output

Contour.jl

Calculating contour curves for 2D scalar fields in Julia

Coverage.jl

Take Julia code coverage and memory allocation results, do useful things with them

craigcitro-dotfiles

null

DataArrays.jl

Data structures that allow missing values

DataFrames.jl

library for working with tabular data in Julia

Datetime.jl

A Date and DateTime implementation for Julia

doozer

Go client driver for doozerd, a consistent, distributed data store

doozerd

A consistent distributed data store.

dotfiles

null

edward

A library for probabilistic modeling, inference, and criticism. Deep generative models, variational inference. Runs on TensorFlow.

Escher.jl

Web UIs in pure Julia

fastlog

A faster, reduced-precision logarithm function.

fastq_rnd_seek

Randomly sample from a FASTQ file without loading the whole file into memory

fastq-tools

Small utilities for working with fastq sequence files.

fastq-tools-website

A simple website for fastq-tools

FunctionalCollections.jl

Functional and and persistent data structures for Julia

gadfly-static-html

Static HTML documentation for Gadfly

gtf-parse-off

Experiments with parsing gene transfer format

hat-trie

An efficient trie implementation.

HATTries.jl

julia hat-trie bindings

highlighting-kate

A syntax highlighting library in Haskell, based on Kate syntax definitions

Homebrew.jl

OSX Binary dependency provider for Julia

IJulia.jl

Julia kernel and magics for IPython

IJuliaWidgets.jl

Interactive widgets for IJulia

Interact.jl

Library for interactive widgets in IJulia

IntervalTrees.jl

A data structure for efficient manipulation of sets of intervals

isolator

Rapid and robust analysis of RNA-Seq experiments.

isolator-paper

The Isolator Paper

JSoC2015

Proposal for Julia Summer of Code 2015

JSON.jl

JSON parsing and printing

Judo.jl

A Julia document generator

julia

The Julia Language: a fresh approach to technical computing.

julia-minimalist-vim

Alternate vim syntax definitions for Julia

LazySequences.jl

Lazy sequences.

Mamba.jl

Markov chain Monte Carlo toolkit for Bayesian analysis in julia

METADATA.jl

Metadata for registered Julia packages.

mk

make remade

peakolator

World's fastest genomic segmentation algorithm.

peakolator-legacy

Some old code.

pique

De novo assembly of sequencing reads with probabilistic data structures.

pyrex.vim

Updated Pyrex.vim with Cython support

quark

semi-reference-based short read compression

quip

Compressing next-generation sequencing data with extreme prejudice.

quip-paper

A paper describing and evaluating the quip compression algorithm.

quip-website

A very simple website for quip.

ragel-julia

A Julia backend for Ragel

Reactive.jl

Reactive programming primitives for Julia

RecursiveSparseBlocks.jl

julia interface to the librsb sparse matrix library

rlsim

A package for simulating RNA-seq library preparation with parameter estimation

seqbias

An R package to correct for sequence bias in RNA-Seq experiments.

seqbias-paper

text and code for 2012 seqbias paper

seqsim

A simplistic RNA-Seq simulator.

sexer_machine

Classify sex given a collection of RNA-Seq samples

SHA.jl

A performant, 100% native-julia SHA1, SHA2, and SHA3 implementation

Showoff.jl

Nicely format an array of n things for tables and plots

Skia.jl

Experimental skia bindings

sls

Stochastic L-Systems in Python

Snap.svg

The JavaScript library for modern SVG graphics.

Specifications

GFF and GVF specification documents

subsample

Randomly sample lines from massive text files efficiently

Switch.jl

A C-style switch statement for Julia

ulam-death-spiral

Exposing the depravity of the natural numbers.

vim-mk

Vim syntax for mk

WebSockets.jl

null

YAML.jl

Parse yer YAMLs

Zlib.jl

zlib bindings for Julia

Commits To