Yan Wang

Login: YanWangTF

Company: University of California, Riverside

Location: Riverside, CA

Bio: Recent Ph.D. (2016) working on fungus-insect symbiosis, fungal genome evolution, and comparative genomics.

Blog:

Blog:

Repositories

Calcu_Identity

reads a .delta.filter.coords output and calculate the percentage of identity among the matches

CodonTrim

reads a codon alignment (fasta from the 1st pos)--trim the remaining ends if not end with 3.

Filter_len

filter out short multiple sequence alignment file for phylogenomic analyses

Find_mutual_BestHit

Identify reciprocal best BLASTp hits

HGTfilter

Filter out the potential horizontal gene transferred element based on a similarity comparison method

Ortho_Rep

Isolate ortholog-representatives from each individual according to an MCL-based method

PlotMidPointRootTree

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PlotRidgeMap.R

This R script is used to plot ridge map of each domain for a given table (column names are domains)

Commits To