Harry Hochheiser

Login: harryhoch

Company: University of Pittsburgh

Location: Pittsburgh, PA

Bio: Assistant Professor, Biomedical Informatics @deepphe, @bd2kccd

Blog:

Blog:

Repositories

2018_nih_datascience_rfi

This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science

bd2kccd.github.io

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ccd-algorithm

This provides an API interface to run a collection of algorithms that are found in Tetrad and others.

CC-Linear-mixed-models

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chart-doctor

Sample files to accompany the FT's Chart Doctor column

craniosynostosis-ontology

Automatically exported from code.google.com/p/craniosynostosis-ontology

dead_simple_owl_design_patterns

A simple system for specifying OWL class design patterns for OBO-ish ontologies.

DeepPhe

Cancer Deep Phenotype Extraction (DeepPhe) project

deepphe-viz-old

Visualization for the DeepPhe project

diabetes-fhir-dashboard

Class project for a SMART on FHIR app to display diabetes details

flaskApp

A flaskApp at a very basic level.

GENO-ontology

Repository for representing genotypes and their association with phenotypes

go-exp

General technique test and test space for Gene Ontology Consortium projects.

hpo

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intro-spacy-nlp

An introduction to using spaCy for NLP and machine learning

KnowledgeBase

Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and health outcomes of interest.

Merged-PDDI

Code to prototype the new Drug Interaction Knowledge Base

monarch-app

Monarch web application and API

monarch-cypher-queries

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multi-axial-ontology-test

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mvtboost

Boosted regression trees for multivariate, longitudinal, and hierarchically clustered data.

neo4j-unmanaged-extension-template

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neveragaindottech.github.io

Source files for the neveragain.tech site

ogm-test

testing neo4j-ogm code

paper-now

Create, edit and display a journal article, entirely in GitHub

phenogrid

The phenogrid widget

phenopacket-format

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phenopacket-python

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phenopacket-reference-implementation

Reference java implementation for phenopackets

py-causal

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pycon-nlp-in-10-lines

Repository for PyCon 2016 workshop Natural Language Processing in 10 Lines of Code

synthea

Synthetic Patient Population Simulator

textacy

higher-level NLP built on spaCy

travis-broken-example

An example that will cause a build failure

upheno

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Viz

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w3c-ddi

W3C HCLS Drug-Drug Interaction

ztreemap3

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Commits To