Bruce Hoff

Login: brucehoff

Company: Sage Bionetworks

Location: Seattle

Bio: null

Blog:

Blog:

Member of

1. Sage Bionetworks

Repositories

dm-mnist-example

This is an example of a DM challenge submission based on the Google Tensorflow demo

dm-python-example

This is an example of a DM Challenge submission in Python.

dm-trivial-model

This is a trivial example of a valid submission to the Digital Mammography challenge

dockerauth

This is a proof-of-concept implementation of the Docker delegated authorization mechanism, written in Java

DREAM9_Broad_Challenge_Scoring

This is the scoring application for the DREAM 9 Broad Gene Essentiality Prediction Challenge.

dzhanibekov

Simulation of the Dzhanibekov effect

end2end-all-conv

End-to-end training for breast cancer diagnosis using deep all convolutional networks

EvaluationStatistics

This application computes statistics on the evaluation queues in Synapse. See https://sagebionetworks.jira.com/browse/CHAL-16 for more info.

ga4gh-to-synapse

Web services to implement the GA4GH APIs using Synapse (www.synapse.org) as the back end

GitSandbox

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ICGCSynapseGlue

This code connects the approved user list from ICGC to the Synapse approved participants list in the ICGC Dream 8.5 Challenge.

Mole-Mapper-Mover

This is a periodic job to copy v1 archived MoleMapper data to the live v2 MoleMapper tables for those patients who have consented to v2.

mPowerProcessing

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mPowerStatistics

An R package for the statistics used in mPower data processing

PythonEmbedInR

Based off of PythonInR (https://bitbucket.org/Floooo/pythoninr/) but includes a standalone, compiled from source python instead of relying on the python installed on the host machine

QuizTextToJSONConverter

Utility for converting quiz text to JSON file suitable for reading by Synapse

Rsftp

R package for sftp and other ssh-related functionality

Rssh2

This is an R wrapper for libssh2

rSynapseClient

GitHub mirror for the Synapse R Client. Please visit the Sage Bionetworks Jira page for additional documentation and project info.

rWithPython

Package allowing R to call embedded/private copy of Python

schema-to-pojo

The schema-to-pojo project was started because we wanted to programmatically generate the Plain Old Java Objects (POJOs) from JSON schemas. More specifically we wanted to use the generated POJOs as resources of the Synapse JSON REST web services API. Since we are using the POJOs as REST resources we also wanted an easy way to marsh instances to/from JSON. Lastly, we also wanted to use the generated POJOs in our Google Web Toolkit (GWT) client-side code and server side code. Thus the schema-to-pojo project was born. Learn more at the folllowing wiki:

Scripts

A place for one-off scripts

STM-metaAnalysis-clearScience

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SynapseChallengeTemplates

A collection of templates for use by those writing Synapse challenge scoring applications. The aim is to provide executable examples in various languages (Python, R, Java).

synapseDocs

Synapse documentation pages

synapsePythonClient

Programmatic interface to Synapse services for Python

synapser

An R package providing programmatic access to Synapse

Synapse-Repository-Services

The Synapse Repository Services project is the home of the JSON REST web services for Synapse.

Synapse-User-Geolocation

An application to geolocate all Synapse users and display them on a map.

SynapseWebClient

The web client of the Synapse REST service core

SynBitMillGlue

Source code for some Python "glue" connecting Sage Bionetworks Synapse to BitMill, primarily for the WCPE Challenge.

Commits To