Emmanouil "Manolis" Maragkakis

Login: mnsmar

Company: University of Pennsylvania

Location: Philadelphia PA, USA

Bio: null

Blog: http://www.emaragkakis.com/

Blog: http://www.emaragkakis.com/

Repositories

biogo

biogo is a bioinformatics library for Go

CLIP-chimaeric

Scripts used for CLIP chimaeric analysis

clipseqtools

A suite for the analysis of CLIP-Seq datasets.

collapseBed

Collapse a BED file. Identical entries are collapsed into a single entry.

coursera_bio_algorithms_part_1

The programming assignments for Coursera course "Bioinformatics Algorithms (Part 1)"

dotgit

Configuration files for git

fastq-trim

Trim Fastq read sequences from the 5' or 3' end

GenOO

A Modern Perl Framework for High Throughput Sequencing analysis

GenOOx-Study

An Object Oriented library for managing deep sequencing studies

go-arg

Struct-based argument parsing in Go

goenv

You know, rbenv but for go.

htsdb

htsdb: library and tools to handle Hith Throughput Sequencing data stored in SQLite database.

jobgraph

JobGraph can be used to create pipelines of jobs that need to run on a machine

lendistro

length distribution for records in common bioinformatics files

mnsmar.github.io

My personal website

monitor-git-reps

Simple BASH script to check if git repositories have any uncommitted changes.

nvimrc

Configuration files for neovim

perl-mybio

Perl library primarily for analyzing deep sequencing data

ribothrypsis

Contains the key tools for reproducing the Ribothrypsis analysis

R-tips

an opinionated collection of coding tips and snippets for R

samToBed

Convert a SAM file to a BED file

samToBigWig

Convert a SAM file into BigWig

scarf_ASCII_to_sanger_fastq

Convert Illumina Scarf ASCII format to Sanger FASTQ format

sra-to-sample

Simple script to download and organize SRA files to samples

tabletools

Miscellaneous scripts for manipulating table files

wig

a simple Go library providing functionality for a slice of integers

Commits To